FastQCFastQC Report
Sat 31 Dec 2022
SRR5843117.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843117.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51606
Sequences flagged as poor quality0
Sequence length46
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTATGGGATTTGGAGATACACTTTGCTGTGGATTAGTGTTGCTT720.13951866062085805No Hit
CACAAAGGGGACAGAACACAAACTGACACCTGGAGTGCTGAAGGCA690.13370538309498894No Hit
TACCTAGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT650.12595434639383019No Hit
ACTCTAGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT630.12207882804325079No Hit
ATGACCGGGATGAGGAGCAAGGAAGCAGCAAGGTCTTCCAGGGCAA580.11239003216680231No Hit
ATTCATGGGCTCTTGACAGTCGTGAGCATATGACCACCAATGTCTT580.11239003216680231No Hit
AGTAAAGGGGACTGAGAAGCGTCGGGGAGCGCAGGCCCAACAGCCA580.11239003216680231No Hit
GTTCCGGGAGGCAGGTCTTGGAACATGGTGCCTGTTGGCAGAACTT570.11045227299151261No Hit
TCAGCGGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT570.11045227299151261No Hit
GGTATTGGGGGTTTTGGAGGTCCCTCCTCATGGGAAGTGGGAGGGG570.11045227299151261No Hit
TGCAGCGGGAATGTGAACTGTGCCCCTGCCTGCCTTCCTCTGCATC570.11045227299151261No Hit
TTCAGGAGGGGGGAATTCCTCTGTGTCATGATCGTGAGTTGTCGCA570.11045227299151261No Hit
CTGCCCGGGGACATGCCTTTGAATGGCATGCAAAGTTTTAAGAAAC560.10851451381622293No Hit
GATCGCGGGGACTGAGCGAGCGGCTGCTACGGTCCACGCTTCTTAC560.10851451381622293No Hit
GCTTTTGGGATTTCCCCGACGACCAGAAGTTTGCTATCTACATCCC540.10463899546564352No Hit
GGCTACGGGGTTTCGTGCCACCGCGGCTGCACCCTCCGCTTCGAGC530.10270123629035383No Hit
CACCAAGGGGACATTCTCAAAGACTGGTGCTATGAAGCTACCTACA530.10270123629035383No Hit
TGCGTAGGGGTTTTCTAACAAGAAAAAAACTGGGTAATTTTTCCCC530.10270123629035383No Hit
CCCTTAGGGATCCTCAGGCCTAGATACAGACTATACTCAGACCTAG530.10270123629035383No Hit
GCTTGGGGAGCCCACCACATATTCACAGTAGGATTAGATGTAGACA530.10270123629035383No Hit
AACTTGGGGAGTCCTAACGCATTGCACTGTTTCCTTTCAAGCCCAG530.10270123629035383No Hit
TTTGCTGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT520.10076347711506414No Hit
TTGCGGGACTGAGTGCTTGGCTCAAGTTCCAATTCTAACATAAAAA520.10076347711506414No Hit
TTTCACGGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATAC520.10076347711506414No Hit
ACGCCAGGGATCAGGATTTCAGATTGCTTTGGGTGGAAAAAACCAG520.10076347711506414No Hit
AATAAAGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA520.10076347711506414No Hit
TGAATAGGGACCCAGGGGACCTCTTGCAGACCAGTGCAGCCCCAGT520.10076347711506414No Hit
TCTCCCGGGACTTTTGGAGGGATCAATGGCTACCTGTTCACCTCAT520.10076347711506414No Hit
CGACTTGGGGTCTGACCTCAGCCTTTTTGGGGGTCTCCCAGCTAAC520.10076347711506414No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)