FastQCFastQC Report
Sat 31 Dec 2022
SRR5843112.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843112.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences54679
Sequences flagged as poor quality0
Sequence length46
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTAAAAGGGATGCCACAACTAGATACATCAACATGATTTATCACAA740.13533532068984436No Hit
ACGCAACCGACTCGGGCAGTACCGCAACGAGGTGCACACCATGCTG710.12984875363485068No Hit
CATCTAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC680.12436218657985698No Hit
TCTACTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC680.12436218657985698No Hit
AAACAGGGGAACCGCCGCATACGGCCGATTGTCGCAGCCCGGGTCG550.10058706267488432No Hit
ATCTATGGGATGACAAACATACGAAAAACACACCCATTATTTAAAA550.10058706267488432No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)