FastQCFastQC Report
Sat 31 Dec 2022
SRR5843111.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843111.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52386
Sequences flagged as poor quality0
Sequence length46
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTAAAAGGGATGCCACAACTAGATACATCAACATGATTTATCACAA720.13744130111098385No Hit
GCAATAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC710.13553239415110907No Hit
ACTACAGGGATGCCACAACTAGATACATCAACATGATTTATCACAA650.12407895239186043No Hit
CATCTAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC640.12217004543198565No Hit
GTATCCGGGGACGCAGCTGCTGGCCAAGGCGGAGCGCGTGGGCTCG600.11453441759248653No Hit
ACGCAACCGACTCGGGCAGTACCGCAACGAGGTGCACACCATGCTG580.110716603672737No Hit
CAAACAGGGATGCCACAACTAGATACATCAACATGATTTATCACAA550.10498988279311267No Hit
GCAACTGGGGGGAATTCCTCTGTGTCATGATCGTGAGTTGTCGCAG540.10308097583323789No Hit
ACGCAAGGGCATCTTGTCACGGGATGACCCACCAAACTCATGCATA530.10117206887336311No Hit
ACTGTCGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC530.10117206887336311No Hit
GATGCAGATGGGTCTGCACCAACTCAGAGTCTTGTTGGAGCTTTAT530.10117206887336311No Hit
ATGCTAGGGGAGTCCAGCCCCCTAGGAGCTGGCAACCCTGCAGAAT530.10117206887336311No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)