FastQCFastQC Report
Sat 31 Dec 2022
SRR5843108.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843108.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29845
Sequences flagged as poor quality0
Sequence length46
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TAGAATGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA540.18093482995476629No Hit
TATTGCGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT530.17758418495560394No Hit
TTCGCAGGGCTAGAGTATGAGCCGATGCACGACTGATACTCGATAT470.15748031496062992No Hit
CAAAATGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT410.1373764449656559No Hit
ACATCAGGGAAATCTGCTTTGGAGCAGCTGCTGGGAGCTGTGGGCT400.13402579996649355No Hit
TTACAAGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA400.13402579996649355No Hit
TAACGTGGGTCTGCACCAACTCAGAGTCTTGTTGGAGCTTTATCCC380.12732450996816888No Hit
TAACGTGGGGGGGGATGTCTTAGGCCTTGTTGGACGGACTTCACAT380.12732450996816888No Hit
GGTGCAGGGACTCTAAGGACGCTGCCGTGTTAGTTGCCCGGCACTG380.12732450996816888No Hit
GGCCTCTCTGTGACTTTATAACTGTCCATACCCCACTCCTGCCCTC380.12732450996816888No Hit
TTTGTTGGGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAA370.12397386496900654No Hit
TGCAACGGGGCAGAACTACAATGGCAATGATGAGAGGAGCCGGGCT370.12397386496900654No Hit
TAACACGGGAGCCCAGATGCGAGGTGGAAAAGTCACACTAGAGCGA370.12397386496900654No Hit
GAAATGGGGGTCTGCACCAACTCAGAGTCTTGTTGGAGCTTTATCC370.12397386496900654No Hit
TCATATGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC360.12062321996984421No Hit
GCGACTGGGATTACTAAAGACATAAATCAACCACAAACAAACAAAC360.12062321996984421No Hit
GTACGAGGGGCCGCCTTCCCACCCCAACCAGTTAATACCTAAAAGG360.12062321996984421No Hit
CGAATAGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT360.12062321996984421No Hit
GCGACTGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT350.11727257497068186No Hit
AACATCGGGCAGGGCTCCCCGAGGCTGCTTAGCGAGTTATCTCCAG350.11727257497068186No Hit
GCAAGGGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC350.11727257497068186No Hit
AAACGTGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT350.11727257497068186No Hit
GGCCTAGGGGGAATTCAGATAAAATGAATAGCTCGTAACCAAACAT340.11392192997151952No Hit
GATTTTGGGGATTCGGGAATTACTGCCCAGCCGCCGACTAAGTTGC340.11392192997151952No Hit
AATCAGGGGGACAGCAGCCCAAGCGACTCCGCAGTGAGGGTGCTGC340.11392192997151952No Hit
GTCGCCGGGAGAAAGTGAGCATTGAGGAGAAAGTGAGCATTGAGGA340.11392192997151952No Hit
ACACCCGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT340.11392192997151952No Hit
GGGCATGGGCTGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAA340.11392192997151952No Hit
ATCTACGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAGG340.11392192997151952No Hit
AATTATGGGAGGTCACCCGTGCAGGCATCAAGCGCATGCGGGCTCA340.11392192997151952No Hit
CGTATTGGGGAAAAGGGGACTTGAAGGAGACGGGCGACACGGCCGA330.11057128497235717No Hit
ACTATAGGGGGGAATTCCTCTGTGTCATGATCGTGAGTTGTCGCAG330.11057128497235717No Hit
ACAAGGGGATGACCCACCAAACTCATGCATATCACATAGTTAATCC330.11057128497235717No Hit
GTGTTTGGGGATCTATGGAAGGGATGACCCACCAAACTCATGCATA330.11057128497235717No Hit
TACCCAGGGGTTCTGCACCAACTCAGAGTCTTGTTGGAGCTTTATC330.11057128497235717No Hit
TGTGCCGGGAGAAGGAGAAAGCCTGAAAAGAAAACAGCAACAATTC330.11057128497235717No Hit
TGATGTGGGGGCACTTCCTGTGCGCTCCCCACCCCGTGTGTTTCTG330.11057128497235717No Hit
TGCTATGGGGGAATTCCAGCAGCGATTAAGGCAGAGGCGTTTGTAT330.11057128497235717No Hit
GAATTTGGGGGAATTCCTCTGTGTCATGATCGTGAGTTGTCGCAGT330.11057128497235717No Hit
TCTCTTGGGGATCTGCGCATGGGATGGCCTACCCATTCCAACTTGG330.11057128497235717No Hit
TCTTTCCGGGAGGTCTCAGAAAAACGAAATATAGGCTTACGGTAGG330.11057128497235717No Hit
TTAAATGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCA330.11057128497235717No Hit
TTCCAAGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCA330.11057128497235717No Hit
GTATTCGGGATGCCTAGATGTGATACACGTTTCTGGAAACTGCCTC320.10722063997319484No Hit
GGTATAGGGAAAGTGGTGGCCGTGTTACACTGGTGGTGAAGGCCAG320.10722063997319484No Hit
TTGCGGGGGGGGACACGGAGGGATCGGAGGGATCGTCTCCAAGAGC320.10722063997319484No Hit
TCTTTTGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT320.10722063997319484No Hit
CAATTAGGGGGGACCGATTCGGCTGCTGGGGCGCAGGCATGGCATA320.10722063997319484No Hit
AGCTAAGGGGGGAAGCGTTCCGCGGCCTGCCGGGTCAGCACCATGA320.10722063997319484No Hit
GCTCCCGGGCTCTGCGCGACGGGCCGGGGGCGCCAGGGGTCTCGGG320.10722063997319484No Hit
ACGCCAGGGGCTCTCCATTAAGTTAAAACCATTCCAGACTACTGTG320.10722063997319484No Hit
CCTGGCGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC320.10722063997319484No Hit
ACTGGGGGCAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCT320.10722063997319484No Hit
CACTACGGGGAGTAGGCACTGGGCTGTGATGGGGCTGCCTGGCTCC320.10722063997319484No Hit
ATCAATGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC310.10386999497403249No Hit
AACACAGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCA310.10386999497403249No Hit
CTCAGAGGGCTTCTTCTTCGGGAAAACACCAAATGGCGGATGACGC310.10386999497403249No Hit
CTCGATGGGGATCTCTCGCCGGGGTCTTTCCATGTGAGGCCCCGGA310.10386999497403249No Hit
ATGCAGGGGCGATCTGTGTACGGGGGAGCGTAGTTCCTAGCCGTGC310.10386999497403249No Hit
TTAGCTGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT310.10386999497403249No Hit
TGCCAAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC310.10386999497403249No Hit
AGAGCAGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA310.10386999497403249No Hit
GTAAATGGGGCACCCACTCCGATTCCCAGTCCTGGCCTTCCCCTAT310.10386999497403249No Hit
TGAACAGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT310.10386999497403249No Hit
CTCATTGGGGGCAGTTGCAAAGTCAAAATTCCAGGAGCCAGAAGAG310.10386999497403249No Hit
ATTCAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATCC310.10386999497403249No Hit
TTTAGTGGGATCTCCAGGTTTGGAGAGGAAGAAATGGGGGCAGTGA310.10386999497403249No Hit
ATTATGGGGGAGAGTCACGTGTGAGCCAAAGATGGAGCTCAGACGA300.10051934997487015No Hit
TGGCCTGGGGGGATCAGGTGATCCGAGGGGCTTCGGAGGGTGTTTG300.10051934997487015No Hit
CGCGCTGGGGGCTCACTGCTGCGGCTGCGCCTCCTTGTTCTCAGCG300.10051934997487015No Hit
TCAATCGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC300.10051934997487015No Hit
ATTAACGGGATGCCACAACTAGATACATCAACATGATTTATCACAA300.10051934997487015No Hit
ACGACTGGGGAGAGTGAACCGCGGAGAAGGTGAAGATGGCTGCCGC300.10051934997487015No Hit
CTCAGGTTGGGGGGGAATTCCTCTGTGTCATGATCGTGAGTTGTCG300.10051934997487015No Hit
GTTCCTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC300.10051934997487015No Hit
CACGTGGGGGGTTTTCGCTAGGTTTCTTTTCTGTTTTTGCGTACTT300.10051934997487015No Hit
TTTAAAGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT300.10051934997487015No Hit
GCATACGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCA300.10051934997487015No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)