FastQCFastQC Report
Sat 31 Dec 2022
SRR5843107.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843107.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28424
Sequences flagged as poor quality0
Sequence length46
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TAGAATGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA470.16535322262876442No Hit
TTGCTGGGGGACTTGAAGGAGACGGGCGACACGGCCGAGGGCACCT460.161835068955812No Hit
GTTCCTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC420.14776245426400225No Hit
GCGACTGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT390.13720799324514493No Hit
CCACGGGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC390.13720799324514493No Hit
CTGATAGGGGGCTTCCCGAAGTCTCCTGCTGCTAGTAAGAGGAAGT390.13720799324514493No Hit
ACTATAGGGGGGAATTCCTCTGTGTCATGATCGTGAGTTGTCGCAG380.1336898395721925No Hit
CTATCACGGGGTCACTCGGAGGAGGCTGTGCCGGGACACAGCGTCC380.1336898395721925No Hit
TTCGCAGGGCTAGAGTATGAGCCGATGCACGACTGATACTCGATAT380.1336898395721925No Hit
GGCCTCTCTGTGACTTTATAACTGTCCATACCCCACTCCTGCCCTC380.1336898395721925No Hit
ATCAATGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC370.13017168589924008No Hit
CACTTAGGGATTCCTGTAATGGCTGCTTTCGGTCCGGCTGTGTCAC370.13017168589924008No Hit
TATTGCGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT370.13017168589924008No Hit
TCATCTGGCATCATAGACACGCTCTTTCAGGACCGGTTCTTCGCCC370.13017168589924008No Hit
AAACGTGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT370.13017168589924008No Hit
GCCTAGGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT360.12665353222628764No Hit
GAATTTGGGGGAATTCCTCTGTGTCATGATCGTGAGTTGTCGCAGT360.12665353222628764No Hit
CATACAGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT350.1231353785533352No Hit
AACATCGGGCAGGGCTCCCCGAGGCTGCTTAGCGAGTTATCTCCAG350.1231353785533352No Hit
GTAAATGGGGCACCCACTCCGATTCCCAGTCCTGGCCTTCCCCTAT350.1231353785533352No Hit
TCTAGAGGGGTCTGCACCAACTCAGAGTCTTGTTGGAGCTTTATCC350.1231353785533352No Hit
TCATATGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC340.11961722488038277No Hit
TCCACAGGGATGCCACAACTAGATACATCAACATGATTTATCACAA340.11961722488038277No Hit
ACATCAGGGAAATCTGCTTTGGAGCAGCTGCTGGGAGCTGTGGGCT340.11961722488038277No Hit
GTCGCCGGGAGAAAGTGAGCATTGAGGAGAAAGTGAGCATTGAGGA330.11609907120743033No Hit
AGAGCAGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA330.11609907120743033No Hit
TTCTAGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACAT330.11609907120743033No Hit
TCCTTGGGGGAGGTGAAATCTTCTGGAAATTGTTTTCTGGGAGCAC330.11609907120743033No Hit
AGATAGGGGACTGAGAAGCGTCGGGGAGCGCAGGCCCAACAGCCAT330.11609907120743033No Hit
CAAAATGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT330.11609907120743033No Hit
ACATTAGGGGGAAGTTCCGAGCGCTGCTTCGTCCATCTTCTGAGCC330.11609907120743033No Hit
AGTAGCGGGCTGCTTACGGGATGACCCACCAAACTCATGCATATCA330.11609907120743033No Hit
ACCCAAGGGACAACTAGATACATCAACATGATTTATCACAATTATC320.11258091753447791No Hit
ATCTACGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAGG320.11258091753447791No Hit
TTTTGAGGGGGGAATTCCGCCGGATAAAGGCTTCTTCGGTACTATA310.10906276386152547No Hit
CCAACGGGGAAGTTGTTATCGTGGCGCTATCCGCCGCCATCCGTGC310.10906276386152547No Hit
CCCGCCGGGTGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAG310.10906276386152547No Hit
GATTCGGGATGACCCACCAAACTCATGCATATCACATAGTTAATCC310.10906276386152547No Hit
TTCTAAGGGGAGTCCGTAGACATCAGCTCTACTGACACTAAGGATG310.10906276386152547No Hit
CTTCTGGGGGGGTTCTGCACCAACTCAGAGTCTTGTTGGAGCTTTA310.10906276386152547No Hit
GTGATAGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT310.10906276386152547No Hit
GCTAAAGGGGCTTCCTGTCTGGCTGGAAACATGGCGTCGCGCAAGG300.10554461018857303No Hit
ATGTATGGGTCTGCACCAACTCAGAGTCTTGTTGGAGCTTTATCCC300.10554461018857303No Hit
GGTGCAGGGACTCTAAGGACGCTGCCGTGTTAGTTGCCCGGCACTG300.10554461018857303No Hit
TTAGTAGGGAGTGGTCGAGGTCAGAGGCGACCTGATCGGTCCTAAC300.10554461018857303No Hit
GCTTTAGGGATTACAACCCCAATAATAAATGATATCTGTAAGAATG300.10554461018857303No Hit
ATTGAGGGAGTATGTAGAGCAACTAAACCCACCAGGATGTCAGAAA300.10554461018857303No Hit
CCTGGCGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC300.10554461018857303No Hit
ACTGGGGGCAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCT300.10554461018857303No Hit
CTGCCAGGGGAAAGTCTTCATGGGTGAAGGATGAAGCTTGTCTGGC300.10554461018857303No Hit
CACGTGGGGGGTTTTCGCTAGGTTTCTTTTCTGTTTTTGCGTACTT300.10554461018857303No Hit
AGTTATGGGATCCTAGCGTCATGAGTCATAGTACCTCATGCTCACG300.10554461018857303No Hit
AATTATGGGAGGTCACCCGTGCAGGCATCAAGCGCATGCGGGCTCA300.10554461018857303No Hit
GTCACAGGGGGGGTCACGAGGGATCACTTCCGGTGCGGCGGCGCGG290.1020264565156206No Hit
GCGAGTGGGGGGCTTTCCCTTATCTTTGCCCTATACTTCACTTGCA290.1020264565156206No Hit
TTGCGGGGGGGGACACGGAGGGATCGGAGGGATCGTCTCCAAGAGC290.1020264565156206No Hit
AGCCCTGGGCATGGAAGGGGGCGCCATTGCTGATGATGGTGTGCAG290.1020264565156206No Hit
GTGTTTGGGGATCTATGGAAGGGATGACCCACCAAACTCATGCATA290.1020264565156206No Hit
TTAGCTGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT290.1020264565156206No Hit
CGCACGGGTCTGGTAAAGGGGTCTGCAGCTAGCCCGCTCTTCGCGC290.1020264565156206No Hit
GTGCAGCGGGGGGGCCTATCGGGCCCTCTTCACCTGGGCTGACTCT290.1020264565156206No Hit
TAACACGGGAGCCCAGATGCGAGGTGGAAAAGTCACACTAGAGCGA290.1020264565156206No Hit
TACGCTGGGGCACCTCTGTGTCACCAGGCAACACACAGGATTGTAT290.1020264565156206No Hit
GAATAAGGGGAGGCATTCAGGCAGCGAGAGCAGAGCAGCGTAGAGC290.1020264565156206No Hit
AAGCAAGGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAG290.1020264565156206No Hit
CTCACAGGGGGCAAAGGGTTTTTGTGAATTACGGTGGTGGGTAAGA290.1020264565156206No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)