FastQCFastQC Report
Sat 31 Dec 2022
SRR5843082.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843082.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences124329
Sequences flagged as poor quality0
Sequence length46
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAATGGGATGCCACAACTAGATACATCAACATGATTTATCACAA1440.1158217310522887No Hit
ATTATAGAAGAGCTAATAAATTTCCATGATCACACACTAATAATTG1440.1158217310522887No Hit
GCAGCTGGGAGTGGGAAAGAGAGGATACAGGGGAAGTGGACCTGTT1430.11501741347553666No Hit
AAGCGGGGTGTCTTAGGCATCGTTGCCATGGCAAGCGCCAATTCTC1370.11019150801502464No Hit
TTAGCTGGGAGAGCGCCTGCGTACGGCTCGCCGCGGTGGCTGGCGC1310.10536560255451262No Hit
TCATGCGGGGGAGCCGAGCTCGGAGCGAGGGCGGGCAGCCGCGCTC1290.10375696740100862No Hit
TTCTTAGGGGCCTCGCTACAGCGTCTTTTGGAAGCAGTCTGTGTTT1260.10134401467075259No Hit
CTTACAGGGGAGGACGGAAGTGAGAAAGTTGCCGGCGTCCCGGGGA1260.10134401467075259No Hit
ATGCAAGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT1260.10134401467075259No Hit
ACTCACGGGGGATGTGACAGTTTTCTCTGGCCTATTTTCCACCCGC1260.10134401467075259No Hit
CTCGCTGGGGGAGCGGCGCTCTGCTAGTCGAATGTCCGGGCTGCGG1250.1005396970940006No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)