FastQCFastQC Report
Sat 31 Dec 2022
SRR5843081.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843081.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences119125
Sequences flagged as poor quality0
Sequence length46
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAATGGGATGCCACAACTAGATACATCAACATGATTTATCACAA1560.1309548793284365No Hit
GCTTTGGGGCAACAGGAACATCCTCGTGTTAGATATTGAGGCTGCT1420.119202518363064No Hit
ATTATAGAAGAGCTAATAAATTTCCATGATCACACACTAATAATTG1390.11668415529905563No Hit
ACGTAGGGGAAGTATCAATTTGCCCTGGCAAATGTACACACCTCAT1310.10996852046169989No Hit
GCAGCTGGGAGTGGGAAAGAGAGGATACAGGGGAAGTGGACCTGTT1270.10661070304302203No Hit
CATAATGGGGGGGACATTCAAATGAGCATCCTAGTCACCGCGTTTA1250.1049317943336831No Hit
TTCGCCGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC1250.1049317943336831No Hit
AAGTAAGGGTATCAGAGGATGGAAAAGAGCTTCCTGGTTGCCTTGG1220.10241343126967471No Hit
ACTCACGGGGGATGTGACAGTTTTCTCTGGCCTATTTTCCACCCGC1210.10157397691500525No Hit
CTCGCTGGGGGAGCGGCGCTCTGCTAGTCGAATGTCCGGGCTGCGG1200.10073452256033578No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)