FastQCFastQC Report
Sat 31 Dec 2022
SRR5843076.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843076.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences95254
Sequences flagged as poor quality0
Sequence length46
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCTGTGGGATGCCACAACTAGATACATCAACATGATTTATCACAA1520.1595733512503412No Hit
TATAACGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA1430.15012492913683415No Hit
CTAACTGGGAAAGGAGTTGACCAGCCAACCGACTCTGCATTCATCT1360.14277615638188423No Hit
TTTCATGGGTGGGAAACCTCTGCTTCCAAGCCAAATTAGGACTTCT1330.13962668234404854No Hit
TCTTACGGGGGAAGGGAGGCACACTTTCTGGCAAACTGTTTTAAAA1330.13962668234404854No Hit
GCTTTTGGGAAGTCTCCCACCCTGGGATCTGCCGAGCTGGAGTTTA1290.1354273836269343No Hit
CAAACAGGGGAGACCAGCAATCGTGGTTCCGGAAGCCTGGTTGGCA1270.13332773426837718No Hit
AGTTGTGGGCAAACGCAAGAACATCAAGACGAAACTGTTAACTCCT1240.1301782602305415No Hit
CTCAGCGGGGGACCCGACTTCGTGAAGCGGCCAGTGCTCGTTCCCG1180.12387931215487014No Hit
GTTTCCGGGGAAGGGGGGTGGGACCCGAACATGGCGGCGGTGGTAG1170.12282948747559157No Hit
TTTGTTGGGCACCTGCTCCAGCTCGGGCCCCTGTACAGGTGTTGTG1160.12177966279631303No Hit
AACCTAGGGCTCACATCCCCAAGCTTAGATAGGTGTGGAAGGGAGG1160.12177966279631303No Hit
CAGCCAGCACTAAAGACTGAGACTTGCAAGGCTAAGTCTGCTCCTT1140.1196800134377559No Hit
ATTAATGGGGAGGTGACTAAGATGGAAGCGTTTTGGGAGTCACGGG1140.1196800134377559No Hit
CTGCAAGGGCAGTTCTGAGTGGATGACGTGCAGATGCAATTTCTCA1140.1196800134377559No Hit
GGGCCTGCCCGCCATCTTGCTGCTGTTGACAGTTCTCCCCTGCATC1130.11863018875847733No Hit
AAAAATGGGGGGATCTCTGGGTTCGAGTGAAAGACCCTGTATTGAT1120.11758036407919878No Hit
ATCAACGGGGAAGGATGTGAAGGGCCAAATTGGGGCCCCGATGCCT1110.11653053939992021No Hit
ACACCAGGCAGTGGCAGCTCCGCCCTGCTCAGCCACGCGACTCCAA1110.11653053939992021No Hit
CTTACAATGGGGGGTTGGTATTTATTTCACTGTTTTCCTATCTAAA1100.11548071472064164No Hit
CAATGTGGGGGCAGCAAGGTATGGAGGCTCCTGTGGTAGCCCTCCC1090.11443089004136309No Hit
CAGCCCGACCAGAAGTCGCCAGTGTCCATGCCCTGAGCCCGTGAGA1090.11443089004136309No Hit
ATTCAGGGGGTTTTGCTCAAGTGCCCGTAGCTGATGGATGGGTGAA1080.11338106536208452No Hit
AGCCCCGGCTCCCAATCTTCACGAAGCCTGCAAGGGTTGTACTCTG1080.11338106536208452No Hit
TAACCAGGGGAATTGATCAGGACATAGGGTTTGATAGTTAATATTA1070.11233124068280598No Hit
TATCTCGGGAGTCGATACTGACAGGAAACTTGGGAGGGCAGATACA1060.11128141600352741No Hit
TCCATAGGGTGACCATGCCTTGCTGAGTGAAGTGATCCAACTGATG1060.11128141600352741No Hit
CCACTTGGGTTAATATTATTTGGAGATACACGTTGCTGTGGATTAG1060.11128141600352741No Hit
CTATGTGGGATTGTCCCACTTTCTTTGAATATCCATTCTTTTGAGA1050.11023159132424885No Hit
TCACGCGGGGGACTCCAGCTGAGGCTGCCGAAGGCAACAGTGATCA1050.11023159132424885No Hit
AGCAATGGGGTTCTACAACATCTGGTCAACCTGTGAAGTCATCAAG1040.10918176664497029No Hit
GCATCGGGGGAAGCAAGATGGCGAGCGCGCGGAACGAAAATCTGTG1040.10918176664497029No Hit
CCAGAGGGAGGAAAGAAACTGGAAAGGAAGCAATGGCCCCTGGTGC1040.10918176664497029No Hit
ATGGCTGAGGGGTCCGCAGTGATGAGCTACGACCGCGCCATCACCG1040.10918176664497029No Hit
TTAGCCGGGGAGCGACAAAAATGGAGGCTGCGGCCGAGCCGCTGCG1040.10918176664497029No Hit
TCTACCGGGGCTTCCCAACATGGCGCAGTCGATTAACATCACGGAG1030.10813194196569173No Hit
GCTCTACCCCGGCTATGCCATGGTGCGGCTGGTCAAGTGTGAAGCC1030.10813194196569173No Hit
TATGCGGGGGAGGAGTTGACCAGCCAACCGACTCTGCATTCATCTA1020.10708211728641316No Hit
CGTCAGGGGGCTCTTTGTCTCGGGCCTGAGTTCGTAGGCGCAGCCG1020.10708211728641316No Hit
CAACTAGGGACATGTAGTTACTTACTACTCCGGAAAAAAAGAACCT1020.10708211728641316No Hit
ATCGCCGGCTACTCCGGAAAAAAAGAACCTTTCGGCTATATAGGAA1010.10603229260713462No Hit
CTTACTGGGGCTTGAGGTCCTTGTTGCTTGTGGGTCGGGTCCTCGT1010.10603229260713462No Hit
CTCTACGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCT1010.10603229260713462No Hit
AGACACGGGGGGTGGGACGAGAGCGAGGCTCCGGACCGATTCGGCT1010.10603229260713462No Hit
TATAGCGGGGGTGCGTCCTCACTCTGAGTACCCCTCTGTCTACGCA1010.10603229260713462No Hit
TGTTATGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC1010.10603229260713462No Hit
TTAATGGGGCAACCCTACACGGAGGTAATATTAAATGATCTCCAGC1010.10603229260713462No Hit
TTCGACGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC1000.10498246792785605No Hit
CTACAAGGGATGCCACAACTAGATACATCAACATGATTTATCACAA1000.10498246792785605No Hit
CTATGTGGGGTGCTGTCATTTCCAGCAGAGAAATGATATCTAGACC990.1039326432485775No Hit
TTTAAGGGGAAGAACCTTTCGGCTATATAGGAATAGTATGAGCAAT990.1039326432485775No Hit
ATCTAGGGGCTTCCCAACATGGCGCAGTCGATTAACATCACGGAGC990.1039326432485775No Hit
CACAGCGGGGAATCAGAGCCTGGGGCTGCTCGACCAGAACCCTCAC990.1039326432485775No Hit
CAGTTTGGGACCCCAGGGTGTAGAGGGCGGTCGCGGCGGTCGCCTG990.1039326432485775No Hit
ACTGCTGGGACCTGGACCAGAGGTGGTAATAAAAGGGCTGGGTCAT990.1039326432485775No Hit
CTCTTTGGGTATGGCCTACCCATTCCAACTTGGTCTACAAGACGCC990.1039326432485775No Hit
TAATCATGGGGGACGGTGAGTGTGCGCTTTTGAGCGGCGGCGGCCC980.10288281856929893No Hit
CTCACAGGGAGGTCTCCTCACACCGGTCCAGTGGCCACATTTGCAG980.10288281856929893No Hit
CAGTTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA980.10288281856929893No Hit
TGCAAAGGGGGAGTATGGATGGGATGGTACAGTGCCTAGTTTAGAC980.10288281856929893No Hit
ACTCCCGGGAGTGCTGAGCGGGCTCTGGCGCGATGGCGAGCGCGGT970.10183299389002036No Hit
TCAAAAGGGGAAAATTAAAAAATTCAAGAGAGAAAAGAAGAGAAAC970.10183299389002036No Hit
TTCAACGGGGTGAATGCGATGGCTACAGGCTCCTTGATGGAAATGC970.10183299389002036No Hit
TCTCCAGGGGGAAGGTGAGCCGGACGCTATGGCGTTCTGCGCTCCC970.10183299389002036No Hit
ATTGCAGGTCAGCGGGAGTTTGACAGGAGATTCTCCCCCCATTTTC970.10183299389002036No Hit
TTTCCTGGGACATGATGTGGCGCACAGCCTGCCAATATGGCGGTGT970.10183299389002036No Hit
TGAGCAGGACCCATGGAAGCTGTTGAAGGAGCAAGAAGAGCGGAAG960.1007831692107418No Hit
GCCCTTGGGCAACGGTAAACTCAAACTACTTTTAACCGTCTGCTTC960.1007831692107418No Hit
TACAGTTGGTCAATTCTACTTCTTGATCCGGAAGCGAATTCATCTC960.1007831692107418No Hit
TAAACAGGGAGTGAGTGGCCCTGAATCTGCTACCCCACTAGCCTCG960.1007831692107418No Hit
TTCGTCGGGGAGGCAAGCCGGAGCTGCACTGGAGCTGCCACGGTTC960.1007831692107418No Hit
AACCGGGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCA960.1007831692107418No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)