FastQCFastQC Report
Sat 31 Dec 2022
SRR5843075.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843075.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences90942
Sequences flagged as poor quality0
Sequence length46
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TATAACGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA1460.16054188383805063No Hit
CTCAGCGGGGGACCCGACTTCGTGAAGCGGCCAGTGCTCGTTCCCG1260.13854984495612588No Hit
AAAAATGGGGGGATCTCTGGGTTCGAGTGAAAGACCCTGTATTGAT1250.13745024301202965No Hit
GCATCGGGGGAAGCAAGATGGCGAGCGCGCGGAACGAAAATCTGTG1250.13745024301202965No Hit
CAAACAGGGGAGACCAGCAATCGTGGTTCCGGAAGCCTGGTTGGCA1230.13525103912383718No Hit
TTCTGTGGGATGCCACAACTAGATACATCAACATGATTTATCACAA1210.13305183523564468No Hit
CTAACTGGGAAAGGAGTTGACCAGCCAACCGACTCTGCATTCATCT1200.13195223329154845No Hit
TTAGCCGGGGAGCGACAAAAATGGAGGCTGCGGCCGAGCCGCTGCG1170.12865342745925976No Hit
CTATGTGGGATTGTCCCACTTTCTTTGAATATCCATTCTTTTGAGA1150.12645422357106728No Hit
GACACAGGGGAACGACCTGGTGTCCGAGTACCAGCAGTACCAGGAT1150.12645422357106728No Hit
CTGCAAGGGCAGTTCTGAGTGGATGACGTGCAGATGCAATTTCTCA1120.12315541773877856No Hit
TATCTCGGGAGTCGATACTGACAGGAAACTTGGGAGGGCAGATACA1110.12205581579468232No Hit
GCTTTTGGGAAGTCTCCCACCCTGGGATCTGCCGAGCTGGAGTTTA1100.12095621385058608No Hit
CTGACAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC1080.1187570099623936No Hit
TTTAAGGGGAAGAACCTTTCGGCTATATAGGAATAGTATGAGCAAT1080.1187570099623936No Hit
TTTTATGGGGACTGTCGACATGGGCACCACCTGGAGGAGCCCTGGA1080.1187570099623936No Hit
GGGCCTGCCCGCCATCTTGCTGCTGTTGACAGTTCTCCCCTGCATC1080.1187570099623936No Hit
TTTGCCGGGACGTGATCGAGGTTTGCGGTGAAGGAGGAAGTGTTTT1080.1187570099623936No Hit
ACCTCAGGGCAGCATGGCTGTACATCCAGCAGGTGACAACATCATC1080.1187570099623936No Hit
TTACCAGGGGACGCCACTTCCAAAGAGTCCCGGCTGGGGTGGGGCC1070.11765740801829738No Hit
TAATCATGGGGGACGGTGAGTGTGCGCTTTTGAGCGGCGGCGGCCC1060.11655780607420115No Hit
CGCCCTGGAGACGCTGAGGCATGGCAGTTTCTTGGTATAACCCAGG1060.11655780607420115No Hit
ATCAACGGGGAAGGATGTGAAGGGCCAAATTGGGGCCCCGATGCCT1050.11545820413010491No Hit
TACAGTTGGTCAATTCTACTTCTTGATCCGGAAGCGAATTCATCTC1050.11545820413010491No Hit
TGCGCTGGGGGGAGGTACCCTCTGTTCCATCCACCACACTGCTCAT1050.11545820413010491No Hit
CTTACAATGGGGGGTTGGTATTTATTTCACTGTTTTCCTATCTAAA1050.11545820413010491No Hit
TTTCATGGGTGGGAAACCTCTGCTTCCAAGCCAAATTAGGACTTCT1040.11435860218600867No Hit
CACGAAGGGGACACTGAGGTTCCTGTGTTTGGAAATCCGAAGATGC1040.11435860218600867No Hit
ATGCCAGGGATTCGGAGGATGGAAGAAGAGACGAAGAGACAGCTGG1030.11325900024191243No Hit
TATGCGGGGGAGGAGTTGACCAGCCAACCGACTCTGCATTCATCTA1030.11325900024191243No Hit
TCATTAGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC1020.1121593982978162No Hit
CTAAAGGGGGGCGCGAGCTGCGCGATAATGGCGGCCTGCAGAGCTC1020.1121593982978162No Hit
TCTGCAGGGCATTTCCTGTCATCCCCCAAACAAGCCCAGCAGTGGG1020.1121593982978162No Hit
AGTTGTGGGCAAACGCAAGAACATCAAGACGAAACTGTTAACTCCT1020.1121593982978162No Hit
CTGTGTGGGGAGGTCGGTAGGGAAAGACGACTAAAAGACAGGTCTC1020.1121593982978162No Hit
TATAACGGGTCCTGAAGATGTAAGAATAAAGCTTTGTCGCAGAAGA1020.1121593982978162No Hit
TCTCTAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC1010.11105979635371996No Hit
CTCTTTGGGTATGGCCTACCCATTCCAACTTGGTCTACAAGACGCC1010.11105979635371996No Hit
TATTGTGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC1000.10996019440962371No Hit
CAGCCAGCACTAAAGACTGAGACTTGCAAGGCTAAGTCTGCTCCTT1000.10996019440962371No Hit
TATAGCGGGGGTGCGTCCTCACTCTGAGTACCCCTCTGTCTACGCA1000.10996019440962371No Hit
ATTCATGGGGGGTCCCCAGGGAACCCCGCAGGCTTAGCCCCACCCG1000.10996019440962371No Hit
TGATCAGGGTAACGTGGAAAGTTTGGGGTTAGGGATACATTTCCAA990.10886059246552747No Hit
GTTTCCGGGGAAGGGGGGTGGGACCCGAACATGGCGGCGGTGGTAG990.10886059246552747No Hit
ATTAATGGGGAGGTGACTAAGATGGAAGCGTTTTGGGAGTCACGGG990.10886059246552747No Hit
CACCATGGGGGCATCCTGAGAGGTGCCATGACAACCAGGATCCTGT990.10886059246552747No Hit
TTCGTCGGGGAGGCAAGCCGGAGCTGCACTGGAGCTGCCACGGTTC990.10886059246552747No Hit
AGATTAGGGGGGAATTCACCAACTCTGGCCTTTGTGTTGCTATTCC980.10776099052143123No Hit
CAGCCCGACCAGAAGTCGCCAGTGTCCATGCCCTGAGCCCGTGAGA980.10776099052143123No Hit
TTTGTTGGGCACCTGCTCCAGCTCGGGCCCCTGTACAGGTGTTGTG980.10776099052143123No Hit
AGCAATGGGGTTCTACAACATCTGGTCAACCTGTGAAGTCATCAAG970.106661388577335No Hit
CTATGTGGGGTGCTGTCATTTCCAGCAGAGAAATGATATCTAGACC970.106661388577335No Hit
CCAGAGGGAGGAAAGAAACTGGAAAGGAAGCAATGGCCCCTGGTGC970.106661388577335No Hit
CCACTTGGGTTAATATTATTTGGAGATACACGTTGCTGTGGATTAG970.106661388577335No Hit
CAGTTTGGGACCCCAGGGTGTAGAGGGCGGTCGCGGCGGTCGCCTG970.106661388577335No Hit
TGTTATGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC970.106661388577335No Hit
TCTACGGGGACAGCGGTTCTATCCACTGCAGTGCAGACATGGCGGC970.106661388577335No Hit
ACAAGCGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCA970.106661388577335No Hit
AACTCAGGGATGTTCTTTTGTGAATAAGTTACCTCACTCAGGATGT960.10556178663323876No Hit
TTCGCCGCGGGCTGGCTCTTAACTTTTCTGTATTTTACTATGAGAT960.10556178663323876No Hit
CTTGTGGGTCAAATGAAGAAGGAAGTCGTCTCAGGGTGTCACTGGC960.10556178663323876No Hit
TAACCAGGGGAATTGATCAGGACATAGGGTTTGATAGTTAATATTA960.10556178663323876No Hit
CAAATAGGGATGGTTACACAGGGGCTTTCAGGTGTCTCGTTGAGAA950.10446218468914253No Hit
AGTAAAGGGGTCCTTCGCTCCTTGTTCCGTCAGGCACTGTGAGGGG950.10446218468914253No Hit
TCACGCGGGGGACTCCAGCTGAGGCTGCCGAAGGCAACAGTGATCA950.10446218468914253No Hit
TACCTAGGGGCCTCTAGTGCTAAGCACCGTGCCTGGTGTTCGACTC940.1033625827450463No Hit
TAAACAGGGAGTGAGTGGCCCTGAATCTGCTACCCCACTAGCCTCG940.1033625827450463No Hit
TGCTGTCGGGGGCGGACGCCATGGTGCGGTTCAAGCACAGGTACCT940.1033625827450463No Hit
CGCAAGGGGGCTTATCCTCACCTCAGCCAACAACATATTTCAACTT940.1033625827450463No Hit
ACACCAGGGGGAGTCTGTTGGCGGCTTCGGGAGCCAGACTGGACTC930.10226298080095006No Hit
GTAACAGGGGAGCCTAGGCCACAGTCTCTGTTTTCAAGTCGTCCCT930.10226298080095006No Hit
AGCCATAGAGAGAGGAACCTCCAAAACCAGGGGCCTCGTGTGGCTG930.10226298080095006No Hit
AAAAGTGGGGTGTCTTCCTGGAGCGGAAGGAGAGCCCAGCAGGTCC930.10226298080095006No Hit
TAACGCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA930.10226298080095006No Hit
GGTAGTGGGCAGGAGCGAAGAGCCAAGCGGCCAGCCCAGCTCTGCC930.10226298080095006No Hit
TTTAATGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACAT920.10116337885685382No Hit
TCTTACGGGGGAAGGGAGGCACACTTTCTGGCAAACTGTTTTAAAA920.10116337885685382No Hit
ACTCTGGGGCATGACCAAGGACAACAACCTGCTTGGAAAGTTCGAG920.10116337885685382No Hit
ACCATGGGGAATATTGAACCTCCTGAGAATGTGGAGTGGAGTGGTG910.10006377691275758No Hit
CAATGTGGGGGCAGCAAGGTATGGAGGCTCCTGTGGTAGCCCTCCC910.10006377691275758No Hit
GCCCTTGGGCAACGGTAAACTCAAACTACTTTTAACCGTCTGCTTC910.10006377691275758No Hit
TCTGCCGGGGGGAGTCGCGCGCTGCTGCATCCACGGAGGCGGTGGG910.10006377691275758No Hit
GTGTGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCTG910.10006377691275758No Hit
CACTCACGGGAGACGTTCTCGCCCAGAGTCGCCGCGGTTTCCTGCT910.10006377691275758No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)