FastQCFastQC Report
Sat 31 Dec 2022
SRR5843054.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843054.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences85892
Sequences flagged as poor quality0
Sequence length46
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCACCACACCCTGAGTGCAGGAACTGGGGAGGGTCCTGCTGGTGGG1450.1688166534718018No Hit
CGTACTGGGGCTGAAGAATCAGCTGTGATTAACAAGATAATAGAAT1240.14436734503795465No Hit
CCCTCCCTCAGAGCATTAAGCACACTGTAGAGAATGCAGACACGTA1060.12341079495179993No Hit
CGATTTGGGAGTCCTTAGGGGCTTTTTCCAAAATTTAGCGGCCTTG1050.12224654216923579No Hit
CTACTAGGGAAGGGCTGGATGGGCTCTTGGAACGCTGTGCTCAGTA1040.12108228938667163No Hit
CTCACTGGGATGTTGGTTCCTCTGTAGCTTGAATTAGAGGGAGTTA1010.11758953103897919No Hit
GGCTGGGGATTCCCAAGATGGCGGACCTACTGGGCTCCATCCTGAG990.11526102547385088No Hit
TCTGCCAGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACA970.11293251990872259No Hit
AAATTTGGGAGGTCAGGTGGCGCTGCGGGGCGGGCCGACAGACTGC970.11293251990872259No Hit
CACTCAGGGGGAGAGGCGCTGGAAGGCGGGCGGGGGGGAGAGGCGC960.11176826712615844No Hit
TGTTAAGGGCACTCATTGTTGGCCCTGTCCAGCCATCCTCCCTCCA960.11176826712615844No Hit
GATAATGGGACTTGAAGGAGACGGGCGACACGGCCGAGGGCACCTG950.11060401434359428No Hit
CAATTTGGGAACTATGGTGAATAACTGTGACCGTGGGTTTTTTGAA930.10827550877846599No Hit
AGTACTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC930.10827550877846599No Hit
GCTTCTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC930.10827550877846599No Hit
CATAGAGGGGGTTCGGCTGTGACGTGGGGTCGGACTGGCGCCTCCT930.10827550877846599No Hit
ACATCCGGGGAATGGCCCTGAAGTCTTTGACAAGGCTCTGGATAAC930.10827550877846599No Hit
CCGAGCTGGGATGACCCACCAAACTCATGCATATCACATAGTTAAT910.10594700321333768No Hit
CTACACAGCGGGGAGGGTGCATGAGGATCATGGGTGTTGCTACCAG900.10478275043077352No Hit
CTACGCGGGGAAGCGGCCATAGCCCAGATGCGAGTGGAAAAGTCAC890.10361849764820938No Hit
CTTACCGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA890.10361849764820938No Hit
ATAGGGGGATGACCCACCAAACTCATGCATATCACATAGTTAATCC890.10361849764820938No Hit
CACAGCGGGAAGGGCAGCTCCGTTCACCCTGCCTTTCCAGGCCAGA880.10245424486564524No Hit
TGACTTGGAGAAAGTACATCCTGATTCATGCTCTAAGAGAATTCCA880.10245424486564524No Hit
ATTGCTGGGCATGAGAACATGAGTTGTGTATGTGTGTGCATGAGAA880.10245424486564524No Hit
ATCTCAGGGCTCTCTCCTCGCGTCACCGCCAGGATGAAACCCATCC880.10245424486564524No Hit
TGGTTAGGGGAGACCGCGCTGGGTTGCCGCCGCCGCTGCCGCCATC870.10128999208308108No Hit
ATAGCTGGGGCGCATGTGCAGAGTGAACCGCGGAGAAGGTGAAGAT860.10012573930051692No Hit
GTAGGGGGGGAGCAGCAGTGAGGACAAAGGTAGCCTCCAGCCTCCC860.10012573930051692No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)