FastQCFastQC Report
Sat 31 Dec 2022
SRR5843053.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843053.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences82204
Sequences flagged as poor quality0
Sequence length46
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCACCACACCCTGAGTGCAGGAACTGGGGAGGGTCCTGCTGGTGGG1400.17030801420855432No Hit
ATTGCTGGGCATGAGAACATGAGTTGTGTATGTGTGTGCATGAGAA1130.13746289718261884No Hit
CATAGAGGGGGTTCGGCTGTGACGTGGGGTCGGACTGGCGCCTCCT1040.12651452484064035No Hit
CCCTCCCTCAGAGCATTAAGCACACTGTAGAGAATGCAGACACGTA1030.12529803902486497No Hit
TCTGCCAGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACA950.11556615249866187No Hit
CTCACTGGGATGTTGGTTCCTCTGTAGCTTGAATTAGAGGGAGTTA950.11556615249866187No Hit
CTCTATGGGAGAGCACATCCGGTTTTAGCAGAGCAGGGAAGCTCCG950.11556615249866187No Hit
ATTTCAGGGAAGGAAGGAATGGAGATTCCCAATTTGAGAGATTCCT940.11434966668288649No Hit
CTACGCGGGGAAGCGGCCATAGCCCAGATGCGAGTGGAAAAGTCAC930.11313318086711109No Hit
ATAGGGGGATGACCCACCAAACTCATGCATATCACATAGTTAATCC930.11313318086711109No Hit
CGATTTGGGAGTCCTTAGGGGCTTTTTCCAAAATTTAGCGGCCTTG920.11191669505133571No Hit
CACCATGGGGCAGTTTGTCTTCGCTGATCGGTGAGACTTCGAGCAG920.11191669505133571No Hit
CTGATCCGGGGATAGGGAATGGATGGGGAAAGAATGGTCTGTTGCC910.11070020923556032No Hit
AGCCATGGGACGATCCGACAGATGAGCCAGTGGCCGAGGAGCCATT900.10948372341978492No Hit
CGTACTGGGGCTGAAGAATCAGCTGTGATTAACAAGATAATAGAAT900.10948372341978492No Hit
CAATTTGGGAACTATGGTGAATAACTGTGACCGTGGGTTTTTTGAA890.10826723760400954No Hit
CTACTAGGGAAGGGCTGGATGGGCTCTTGGAACGCTGTGCTCAGTA890.10826723760400954No Hit
TGACTTGGAGAAAGTACATCCTGATTCATGCTCTAAGAGAATTCCA880.10705075178823414No Hit
CACAATTGCGAAGATGAAGGCTCTGTGGGCCGTGCTGTTGGTCACA870.10583426597245875No Hit
CCTTCCGGGGGCATTTGGGTAAAAGTCGCACGGAGGAGCAGCGTCT870.10583426597245875No Hit
GAACTGGGGTGCCTCCTGGTGGTCCTCACATGTCCTAGACTGGCTC870.10583426597245875No Hit
CATCTAGGGGGCCATTATCGTGCTCACCAAGTCTGGCAGGAGTGCT860.10461778015668337No Hit
AATAACGGGGGAAGGCGAAGGCAGCGAGCGTCGGGTTCCGTGGCGC860.10461778015668337No Hit
AAACATGGGGGGAATTCCAGCAGCGATTAAGGCAGAGGCGTTTGTA860.10461778015668337No Hit
CGCTCAGGGAACTGTGGCATGGGGAGGGAGGCTGGAATGTGGGCCG860.10461778015668337No Hit
GCCACAGGGGATCTATTACTCGGTGGGTTGGTGGTGTAAGAAACCC850.10340129434090797No Hit
ACACACGGGGCTCAGTATAAGAAGGACGGTGCTGATTTTGCCAAAT850.10340129434090797No Hit
TGTTAAGGGCACTCATTGTTGGCCCTGTCCAGCCATCCTCCCTCCA850.10340129434090797No Hit
TAGGTTGGGGGAGGAAGGAAGCAACCATGCAAGTGCTAACGAAACG850.10340129434090797No Hit
CGAAGGGGATGACCCACCAAACTCATGCATATCACATAGTTAATCC840.1021848085251326No Hit
TATTTAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC840.1021848085251326No Hit
GTCATGGGGCTGCACCAACTCAGAGTCTTGTTGGAGCTTTATCCCT840.1021848085251326No Hit
TATTGCCGGGATGCCACAACTAGATACATCAACATGATTTATCACA830.10096832270935721No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)