FastQCFastQC Report
Sat 31 Dec 2022
SRR5843052.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843052.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences73765
Sequences flagged as poor quality0
Sequence length46
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCTCCGGGGAGATCATATTTTGCCGACAAAATATGGATTGAAAGA1170.15861180776791162No Hit
TTTCATAGGGGGAATTCCTCTGTGTCATGATCGTGAGTTGTCGCAG990.1342099911882329No Hit
TAGTATGGGAGACAAGTCTGAGAACGTTCAGGATTTGCTGCTCTTG980.1328543347115841No Hit
CGATATGGGATTGCTGTGTGGGATAAACAGTAATGGCGGAGGCTGC980.1328543347115841No Hit
TAGGATGGGGTTCTGTGCCCGTGCTAGCTGATAGACACCGTCGGTT950.12878736528163764No Hit
TGCAATGGGGACTGTCATCCGCCGGCACGCAGGTCCGCGGGGAGGG950.12878736528163764No Hit
CTGTAGGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT920.12472039585169117No Hit
AAATCTGGGAGAGGGAGAAAATGCCATGGTATGATTGAACCTGTGT920.12472039585169117No Hit
ACTGGTGGGGGTGCCTGCAACCTTGTCTGAGAGGAACCCTTCTCTG900.12200908289839354No Hit
TCTACTGGGAAGAAATTAGCGGTGATTAAGAAGAGATCAGCATCAT900.12200908289839354No Hit
ACTAACGGGGGCATTTGGGTAAAAGTCGCACGGAAGAGCAGCGTCT900.12200908289839354No Hit
CTACTTGAGGTCCCTTGTCAGACCCCGAGTGGCAGAGGAAGGTTGT890.12065342642174474No Hit
GGATTCGGGATTCAGAGAAACGGATGTGAAAAGCATAGAGGTGTGC880.11929776994509592No Hit
GTAGCTGGGGAGAGGAGGCTGTTCGAGTAGCCGGCCAAGAGCGCCG870.1179421134684471No Hit
TCATTCGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC870.1179421134684471No Hit
ACATATGGGGATCTTCGGTGAGACTGGATGAAGTCCGGAGAGGCGA870.1179421134684471No Hit
GATGCCCTTTGAGCTTTGCTTCCTGGTGCAGAGGTCAGAGTTCAAG870.1179421134684471No Hit
ATCTATAGGGGTCCGGGACAAGTTTATCTTGTGACTGCTCGGGCTG860.11658645699179827No Hit
CGACCCGGGCGATCTTCATTGGGGGGGAATTCCTCCTCATGTGAGC860.11658645699179827No Hit
CTTAATGGGTCCACAGAGTGGAGAATAGAAGAATGCCAGAGACTGG850.11523080051514946No Hit
TAGTAAGGGGTGTGTGCATGCGCACTTGCTCAAGCCTGTGTGTGTG850.11523080051514946No Hit
TCGAACGGGGCCCATGCCAGTGCCTGGCCACGATGTGGAAGCCTAC840.11387514403850063No Hit
GCTTATGGGGGCAATCCCCGACGCTGGTACCGCCCGCCGGACGGAC840.11387514403850063No Hit
AACTTTGGGGAATAGTATGAGCAATAATGTCTATTGGCTTTCTAGG840.11387514403850063No Hit
TATTTTGGGGGGAATTCCTCTGTGTCATGATCGTGAGTTGTCGCAG830.11251948756185182No Hit
GCATTAGGGGAGAGTGAACCGCGGAGAAGGTGAAGATGGTTGCCGC830.11251948756185182No Hit
TAGCTAGGGCACCGGCGCACGCCACAGGCGTCATACTTCCCAAGAA830.11251948756185182No Hit
CGCACTGGGGCGCACGGGTGGACGGAGACTATTAACACGCGGCTCT830.11251948756185182No Hit
TACTTCGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC820.11116383108520302No Hit
CGCAAAGGGGAATTCATGTGGAGGTCAGAGTGAAAGCAGGTGTGAG820.11116383108520302No Hit
TTCTATGGGAGGCCGAGGCCAAGATGGCGGCGCTGGCGGCTCCTGG820.11116383108520302No Hit
TTCTCTGGGGACGGTATCAACAGGAACATCCTCGTGTTAGATATTG820.11116383108520302No Hit
CCAGTAGGGCCAGGACTCAGCAGTATCTTCCTGCCCCGCATGAATC820.11116383108520302No Hit
CGACAGGGGGGGTTGTCGAGTCCCTTCTGTCCCAGTCGTTCGTGCC820.11116383108520302No Hit
AGACTAGGGGGCGATGCCCCTTATAAGGCTGGCGGCCCGGTGGCCT810.1098081746085542No Hit
TCAAATGGGGAAGACAAACTCAAGGGCGAGATGATGGATCTCCAGC810.1098081746085542No Hit
GCCTGTGGGACTGTGCCTGCAACCTTGTCTGAGAGGAACCCTTCTC810.1098081746085542No Hit
ACGCCAGGGGAGGTGCGGGTCCGGCTGTGGGCTCTGAGAGGCCCCT810.1098081746085542No Hit
TTCACCGGGACAGTAGTCTTCAGCACGGTTTTTAAAGATGACGACG810.1098081746085542No Hit
TTCGCGGGGATAAATAGGGGGTCTCCACAGTGCCCTCTGCTCCTTC800.10845251813190537No Hit
GCAGCTGGGGCGTGGATGAGAACATTGAGAGGAGAAACCACTACCT800.10845251813190537No Hit
GCCATAGGGGAATTGGGGACATTCAAATGAGCATCCTAGTCACCGC800.10845251813190537No Hit
GTCTTAGGGTTACTTTGAGGGGACACTTGCGTCATCACTGATTTGC800.10845251813190537No Hit
CTCGCTGGGAGACTAGAATCTAACACAAAGTGCTATTGCATTAAAT800.10845251813190537No Hit
TGTCTTGGGGACGCAGTTTTGCTCCTTGGATTCTGAGCCCGGGCAT800.10845251813190537No Hit
CTATTAGGGGAGGCGGGCAGTCATGGCACTCTCGGTCCTGACGTCA800.10845251813190537No Hit
ATTCTAGGGAGGGAATTCTGAGCTGAGATTGTCCTTGTCACCATCC800.10845251813190537No Hit
TACAAAGGGATCCCCAGCGGTGAGGGAGCCATGTCCGCGCTACTGG790.10709686165525656No Hit
TCGTCCGGGCACCAGTGTGGTGTGACCACTCCAGCTCCCTGAGTAT790.10709686165525656No Hit
TGAAAGGGGGCATCACACGCTTCCTCTCTGAGTTCCAAAACAAGCA790.10709686165525656No Hit
TAGTGGGGGAGAAAAGCTTAAAAGACTCCAAGAAAGGAAAACCCTG780.10574120517860773No Hit
TATTCAGGGGGGAGTCGCAAGGTCTGACCACACAGCAAATTCCAGT780.10574120517860773No Hit
CATTTTGGGGGTTTTCGCTAGGTTTCTTTTCTGTTTTTGCGTACTT780.10574120517860773No Hit
CAACACGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC780.10574120517860773No Hit
ACCAAGGGGGACTGTTCATCTTCAAAGTGAAAATGGAGTCTTGGGC780.10574120517860773No Hit
CGCGCAGGGTCAGCCTGTCCTGGCAGACCAAGTTCCAGGTGACAGC780.10574120517860773No Hit
TAAGCAGGGGAAGCCGAAGAGGGCCGCTTCCGGCCGCTGCGCCCGT770.10438554870195892No Hit
CACACAGGGGGCGGTCCGAGCGAGCGCGTCCTTGCTTCAAAGAGAT770.10438554870195892No Hit
TAGTTAGGGGAGAGTGAACCGCGGAGAAGGTGAAGATGGCTGCCGC770.10438554870195892No Hit
TTCAGGGGGGAGGCAGCCCGCGCCATGAGCAGCACGGCAGTGGTCC770.10438554870195892No Hit
TGCGTCGGGGCCGGTGCAGCGGGAGATTCACCAGGACTGGGCGAAC770.10438554870195892No Hit
CAAACAGGGGCGCGGTGAGCTGAGCAGCATGGCGTCGGTGGCGCTA770.10438554870195892No Hit
TGGAGTGGGGATTCCATGCCTAGATGTGATACACGTTTCTGGAAAC770.10438554870195892No Hit
ATGCTAGGGGTTGTTTTGTTTTTTCAACTTTCCTTAATGATTGTGA770.10438554870195892No Hit
CAACCAGGGGACAGAAATTTACACAAGAAGCCATGTTGCCAGCCCT770.10438554870195892No Hit
GTTAACGGGATGCCACAACTAGATACATCAACATGATTTATCACAA760.10302989222531012No Hit
CCTAGCTAAAGGAGAGGGGGAAGGAAGAGAGAAAGCAGTGTATCTT760.10302989222531012No Hit
AACACTGGGTCGTTTATGAACTAGCCTATCGCAGACGGTATCAACA760.10302989222531012No Hit
TGGTGAGGGGCCCAGTTCCAGATCAGAGACTGCCCGCTTAACACAG760.10302989222531012No Hit
CGCTGTGGTGACGGCAGCGGGACCGGGATGGAAGGGAGCGCGGTGA760.10302989222531012No Hit
TTACAGGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT760.10302989222531012No Hit
TCTCGCGGGAAAGTAGAAAAGAAAGTAGAAAGGAAGAGTCGGCACG750.1016742357486613No Hit
GCAAGGGGATCTTCGCCGGGGAGTGACGAGAGGCTTTGTCCGGTTC750.1016742357486613No Hit
CTTATTGGGGCTGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGA750.1016742357486613No Hit
CACCCCGGCAAGTGTGTGATAGTGCTCATGGACCAGGCTGGCAGGC740.10031857927201247No Hit
ACTAACGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCT740.10031857927201247No Hit
ATCGTAGGGGGGGCGGGTTGGCGCAGGGTCGTCATGTTGTCGCAGG740.10031857927201247No Hit
AACATGGGGGACTGCCGGAAAAGGTCCAGCAGAGCTCAGCAGCCAA740.10031857927201247No Hit
AAGCTGGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC740.10031857927201247No Hit
ACGCATGGGGGAGCGCTGGAACGCGGGGTACCCGGCGTGCGATTCT740.10031857927201247No Hit
GTGCATGAGAGAGAGAAGATGACGCAGATAATGTTTGAAACCTTCA740.10031857927201247No Hit
ATGCTAGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCA740.10031857927201247No Hit
ATTCTGGGAGCCCTGGGTGCTGGGAAGGATGGTGTACGTTGGGGAA740.10031857927201247No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)