SRR5843046.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR5843046.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	60516
Sequences flagged as poor quality	0
Sequence length	46
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CAACAAGGGAGAAGGAGAAAATCCACTTCAGAGCATCTCAAAACAT	88	0.14541608830722455	No Hit
GGCGATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA	86	0.14211117720933308	No Hit
TCTAGGGGATGGCAGTGATCCTGTTTCAGCTTCCTTAGTTCTGAAA	70	0.11567188842620134	No Hit
AAAAGCGGGGTATGCTGATATGTCGCGATCTATGTGGTGACTATGA	68	0.11236697732830987	No Hit
GTTAGCGGGGCTTTCTCTAGGAAATGAAGCTGAACTCTGTAGTGCT	64	0.10575715513252693	No Hit
ACAGAGGGGATCATCCTCATCTTGCTGGGCCTGCTGCTCTTCAAGC	63	0.10410469958358119	No Hit
TACTGCTGGGTCCTGAGCATTGTATAAGCCCCTAGGACTCTTAGCT	63	0.10410469958358119	No Hit
TGATAAGGGATCTCACCGAGGGGGGAATTCTGGACATTAATTAGGG	62	0.10245224403463546	No Hit
GCATGTAGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA	61	0.10079978848568974	No Hit
AAACTAGGGGCAGGAGGCTCGGGTGACGTCAGGCGCGCCGCTGCGG	61	0.10079978848568974	No Hit
TCGCCAGGGGTGGGCCTTTCTCGAGTGTCTGACTACAAACACCACT	61	0.10079978848568974	No Hit
GAAGCCGGGAAGGCCAATGCAGGAAGTTACAGGCAGAAAGTAAAAG	61	0.10079978848568974	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGACGC	30	4.7913927E-6	40.000004	9
GGACTGT	30	4.7913927E-6	40.000004	8
GACGGGG	30	4.7913927E-6	40.000004	4
CGCCAGG	30	4.7913927E-6	40.000004	2
GGCGACG	30	4.7913927E-6	40.000004	8
TCAATAG	30	4.7913927E-6	40.000004	1
CAATAGG	60	0.0	40.000004	2
GGGCGAC	30	4.7913927E-6	40.000004	7
AGGGGTA	40	1.8770152E-8	40.0	6
ACACGTC	20	0.0012463643	40.0	27
GCGGGAT	35	2.9928378E-7	40.0	5
GGTGATA	25	7.7073375E-5	40.0	9
ACTGTCC	20	0.0012463643	40.0	34
GGATGCG	25	7.7073375E-5	40.0	8
GGATGCC	90	0.0	40.0	8
AAACCGG	20	0.0012463643	40.0	2
ACTAAAT	20	0.0012463643	40.0	35
ACTGATT	20	0.0012463643	40.0	19
ATTAGTC	20	0.0012463643	40.0	29
GACAGAC	25	7.7073375E-5	40.0	21