FastQCFastQC Report
Sat 31 Dec 2022
SRR5843045.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843045.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57800
Sequences flagged as poor quality0
Sequence length46
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAACAAGGGAGAAGGAGAAAATCCACTTCAGAGCATCTCAAAACAT1100.1903114186851211No Hit
GGCGATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA880.1522491349480969No Hit
TCTAGGGGATGGCAGTGATCCTGTTTCAGCTTCCTTAGTTCTGAAA690.11937716262975778No Hit
TTTCGGGGGGATTTTGAGTGGCAAAATGTTTTTCCTTTTGTACTCT650.1124567474048443No Hit
TACTGCTGGGTCCTGAGCATTGTATAAGCCCCTAGGACTCTTAGCT630.10899653979238755No Hit
AACCTGGGGGATCCCATGCATGGCAGCTTAACTGGAGTGAAGCTGA610.1055363321799308No Hit
TCAAGCAGGGATGGGGGAGGAGAGCAACATGTCATGCTGAGGAAGT600.10380622837370243No Hit
CAAATCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA600.10380622837370243No Hit
GCAATAGGGATGCCACAACTAGATACATCAACATGATTTATCACAA600.10380622837370243No Hit
TTGGGTGGGAGATTTTAGGAAGTTGGTTTTGACTTCTATACTTGCT590.10207612456747406No Hit
TCATATCGGGGCTGAATACCAGGTCTTTCGCAGTTTTCTTGGGATG590.10207612456747406No Hit
TACAAAGGGGATGATTTGTGGCATCTCAACCAAGGGCCCCTGTGTG580.10034602076124569No Hit
AGCTACGGGGCTTCTGACCCCTCAAGCTCTCTTCGGGCTGCCCAAG580.10034602076124569No Hit
TACTATGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAGG580.10034602076124569No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)