FastQCFastQC Report
Sat 31 Dec 2022
SRR5843040.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843040.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35628
Sequences flagged as poor quality0
Sequence length46
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTATTTGGGATTGATACATAAGGTGGAGGTAGAAGTGAGTGGGGAA620.1740204333670147No Hit
AAGAACGGGTCATTATCACAGGAGCTGCCAGTTATTCCTACCAAGT590.16560008981699786No Hit
GTTAGTGGGATTGTGCACAGAGGCAGAACACATAGAAGAAGGGAAT580.16279330863365893No Hit
TACGCGGGGCGGAGCCCACTGGGCGAACAGCAACGTTATAACGGCC580.16279330863365893No Hit
CTAGCTGGGATCATTGCTACCCAGGCATATTCTAAGACAGGCATCA570.15998652745031997No Hit
AATTTAGGGAGGGTTCAAATAAAAAATTGTTAACACCTGGAAGTTG570.15998652745031997No Hit
GCGCTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA550.15437296508364207No Hit
CGCAAAGGGAGAATATAATCACAATGGATTCTGACCCATTCAATTA550.15437296508364207No Hit
CCTACAGGGATGCTATTTAATAAAAAAGATGGGTGGGGGTTTCTTC550.15437296508364207No Hit
CGTTAAGGGGCTTCTGACTCAGTCATCGCCCCTGTACACTGAAGAG530.1487594027169642No Hit
TTTTCTGGGGTAGCTGAACATCTGTGAATGAGCCAACTCACCCTCA520.14595262153362523No Hit
TCTTTGGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT520.14595262153362523No Hit
AGTTCCGGGATGAGGAGCAGGCCCGCCTCAGCAAACAGCACCTGGA520.14595262153362523No Hit
CAAATAGGGGCCTTTTGTGACTGGCGGTGAACGAGTGCGCAGTGCC520.14595262153362523No Hit
ACAAATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA510.1431458403502863No Hit
ATTTTTGGGAGAAGGCAGCGCTTCACTCTCAGGTCAAAATGGCGGG510.1431458403502863No Hit
GGCACCGGGATTGAGGCCACTGCAGATGACACAGAGACCAGTGAAG510.1431458403502863No Hit
CATTATGGGGATAATGAGTGTTATCCTTATTAATCCCATTGAACTT510.1431458403502863No Hit
TTACTGGGGGCTATTGCACTAACAAGCCTGTGAGCTTTCAGAGGGG510.1431458403502863No Hit
TTTAAAGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC510.1431458403502863No Hit
AGCTCTGGGATCTCTTCTTGGAGCCGAACCCTGAGGACCCACTGAA510.1431458403502863No Hit
AGCTTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA510.1431458403502863No Hit
GACAGAGGGGGGCCTGCTTGTGGGTGCTTTGCAGCAACCGAGCACT500.14033905916694733No Hit
ACATCAGGGGTTTGATTCATCTTTAATATGAACAATTACAGGAAAC500.14033905916694733No Hit
TAGCCCGGGGGGCGGCGACCCCAAAACAAGGCCCGCGAATGTTGGG500.14033905916694733No Hit
GATTATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA500.14033905916694733No Hit
TCCAAGGGGGCAGCTTCCGGCCAGTCGGAATTCCGCTTCCCGTCTG490.1375322779836084No Hit
GTGTGGGGCAGTTAGGGCAGCGTCTGAGGAAGTTTGCTGCGGTTTC490.1375322779836084No Hit
ATTGTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA490.1375322779836084No Hit
GCATCTGGGTTATGTGAAGAAATAAGTATTTAGTTTTCTGTAGGGT490.1375322779836084No Hit
TTTATCGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAG480.13472549680026946No Hit
TCCAATTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA480.13472549680026946No Hit
CGCAAAGGGAGGAGGCATTGTCTTAAGGACCATTTCCTTCCCACTC480.13472549680026946No Hit
GTTCGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC480.13472549680026946No Hit
ACACTAGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC470.1319187156169305No Hit
TCACATGGGATGTCCCCTCTGTGAATTAATGTTCCCTCCTAACTAC470.1319187156169305No Hit
CGCAGCGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC470.1319187156169305No Hit
CTCGCATAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCT460.12911193443359156No Hit
CGTCCAGGGGGGAATTCCTGGAGATTGTCTCGTACGGTTAAGAGCC460.12911193443359156No Hit
TCTGGTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC460.12911193443359156No Hit
ACTAATGGGTGGAGGAGACATGCTACTGCCTGGTACTTTCTATCAG460.12911193443359156No Hit
AAGTAAGGGGGTATTTCTGAAGCTGGGTTCGGAAGGGTATGTTCCT460.12911193443359156No Hit
TAAAACGGGGATTAGTGAATATAGTTTGGAGTTTGGCTTCGTGTCC460.12911193443359156No Hit
ATTCCAGGGCTCTCGGTCTTAGCGCCATCTTCCTTGGTTAGTCGCG460.12911193443359156No Hit
AGCTAAGGGGATGCTCATGATCCTGTATCCAGATGTGCAGCGCCGA460.12911193443359156No Hit
GGGACTGGGGTATCCCAATTCTCAGAGGTCCCGCCGTACGCTGAGG450.1263051532502526No Hit
GTGCTTGGGGACTAATAAATTTGAACTCTGACTTCATCTCCTTCAA450.1263051532502526No Hit
ACCACAGGGTGCTCTCAAGATCTGTGCCAAGATCAATGTCCTCAAG450.1263051532502526No Hit
CGGCAAGGGGTTTTACAACATTTGCTTACAAATGTCACCAGATTCT450.1263051532502526No Hit
TATTAGGGACCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAA450.1263051532502526No Hit
CTCAAGGGGACACAGTGATAGTGCAAAACCCAGAATGGATGTCCTC450.1263051532502526No Hit
CTGTAAGGGGGTTTATTATGTAGGAGCTAAGGATGCAACTCTAGTC450.1263051532502526No Hit
CTTAATGGGGTGAACTTCTTTGGCAGGTTGCATATTCTTATACTTA450.1263051532502526No Hit
CTTGGAGGGCGATCTATAGCCGGGGATTGCCTGAGCTATATTATGT450.1263051532502526No Hit
AAATGCGGGATAGGCGCGGGCCGGCGTGTCCTTGGGCTAGAGCGCG450.1263051532502526No Hit
ATTGCAGGGGAGCTGGACGAGAGCAACACCCCCATGTGTGTGTGCC440.12349837206691366No Hit
TAATGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGT440.12349837206691366No Hit
CTCACGGGAAGCTGATCCAGGAATGGAACTCCGTGGACCTCAGGAC440.12349837206691366No Hit
TGGTCAGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC440.12349837206691366No Hit
CTTCTAGGGGACCTGCACTGAAGTGCACAAACTCACAAATGACCTC440.12349837206691366No Hit
TGCAGTGGGGGGTACCCTGGAATTGGTGGGATTTTGTGGCCTGATA440.12349837206691366No Hit
CGCTGTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA440.12349837206691366No Hit
CGGCACGGGGGACCTCGCAGCCGACATGTCTCTGGTGGCGGAAGCG440.12349837206691366No Hit
AAGGAGGGGTAAAAAGAAAAGGGGAGAAGGAAGAAAAGTAACTTAA440.12349837206691366No Hit
CTACTTGGGATAGCACTTGTTATTGCATCAATCATAATCCAAACTC440.12349837206691366No Hit
CTCGTAGGGAGAAGAGCATTTAGTGCTCTTAGCCACTAACCCATCT440.12349837206691366No Hit
GCCGCCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA440.12349837206691366No Hit
CAAAGCGGGGCTTGTGCTGCACAGGCTGCTCTGTGAACGCTACAGG440.12349837206691366No Hit
CGCTAGGGGGACTTCTGATTCTGACAGACTCAGGAAGAAACCATGG440.12349837206691366No Hit
CGTTAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA440.12349837206691366No Hit
GAGAATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA440.12349837206691366No Hit
CCATGAGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC430.12069159088357471No Hit
CCATTAGGGATAGACGTTCCTGTCGATCCTTGGGAGATCATGGCCT430.12069159088357471No Hit
AACCCAGGGACTATACATGGGGCCAAGTTCAACCCTCAGAACCAAA430.12069159088357471No Hit
AATGCTGGGATGTAGCTCAGTGGCCAAACGCTGGCTTTAGCAGCTT430.12069159088357471No Hit
CATAATGGGGTGTGTAGGGGTTGCCGCTTCTGAGCTGGCCAAAGCC430.12069159088357471No Hit
CACGCAGGGGGCGCGGGGAAAATGGCGGCGGCAGCTGCGGCGGGGG430.12069159088357471No Hit
TGCTATGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACT430.12069159088357471No Hit
AATTATGGGGGGGGACAGGCAAAGCAGGAGATCACATGTTTTTTTC430.12069159088357471No Hit
TTGGGCGGTTTGAGACAGTGAGTGAAATATCTTTGAGACAACTATT430.12069159088357471No Hit
TTCTTAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA430.12069159088357471No Hit
CGCTTTGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAG430.12069159088357471No Hit
CGCTTGGGGGGAATTCATCTCCTCTAACTTTGGAGAGGTAGGAATG430.12069159088357471No Hit
TAGACGGGGGGAGCACAGCAAGGACCCAGCTCTGTAGGGCTGGTGA420.11788480970023577No Hit
TCACGCGGGGCTCTGGGGAATATTCCTGCATCTTCCTTCCTGAGCC420.11788480970023577No Hit
ACCTGGGAAGTCACTGGTTGCTGAAGATACTACTTCTGTTTTATTT420.11788480970023577No Hit
AAATTAGGGAGGCATAAGTGAGAGAGAAGAATTCCAAAATTAGTGG420.11788480970023577No Hit
CTACCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA420.11788480970023577No Hit
CTTTTTGGGGAAAGATTAGCTGCATCCATTCCACTGACACATCCTT420.11788480970023577No Hit
CTTCTTGGGGGGAATTCGAGCTCTTGATGATGATACTTAACCAAAC420.11788480970023577No Hit
GCTCAAGGGAGATAGAAAGAATGCAAATGTGTCTGCTGGAACAAAA420.11788480970023577No Hit
AGCCTGGGCATGAGCAGCTGAGTACCTTTAGCAGCCATGTTCTTTC420.11788480970023577No Hit
TATACAGGGGGGCTAGCTCTGTCAGGCTGCCTAGCCTGGCCCAGTC420.11788480970023577No Hit
CTTCAGGGGGTGCACACTGAGGCCTAGCGGCCACCTCCTGAGGTCA420.11788480970023577No Hit
TCGCGTGGGGGGTGTGCACGCTCACGCAGAACACAATGCTGTTTGC420.11788480970023577No Hit
GCACTGGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC420.11788480970023577No Hit
TCGCTGGGACAAATAGCACTTGCTAAAAATGCATAATGAGACTGAG420.11788480970023577No Hit
TGTGTCGGGCGGCCTTAAGAACATTCTGGACAGATAACTGCACCAT420.11788480970023577No Hit
TAAGCAGGATGACCCACCAAACTCATGCATATCACATAGTTAATCC410.11507802851689682No Hit
TCGCCAGGGACATTTAGAACTTGAAAGGATTTTAAAAAACAAAACA410.11507802851689682No Hit
TACCCAGGGACGAAGAGTCTGAATCCCAAAGAAAAGCAAGATCTAG410.11507802851689682No Hit
TGAGGAGGGGGTACAAGTGTGATCCTGCAGGTTACTACTGTGGCTT410.11507802851689682No Hit
GTTCCAGGTGTGGGGATTCCGTGTATGCTGCGGAGAAGATCATTGG410.11507802851689682No Hit
CTTACAGGGGTTTCTGTACTTCTATTTGAACTGGATAACAGAGAGA410.11507802851689682No Hit
GAGTTGGGGGGGGCGGCAGCGGCGGGAGCTACCGAGAGCAAGGAGC410.11507802851689682No Hit
AGGTCTGGGGAAGAGAGAAGTAGACGCTCTAGTGGGCATCGGGACA410.11507802851689682No Hit
ACTTTTGGGGGGAAGAGCAAACCAATGCTCTTAGGAAGCTAGGTCA410.11507802851689682No Hit
TGTTATGGGGCTCTTCATTATGTGCTCTTTGTAATTGCTTTGTGTG410.11507802851689682No Hit
ACTTAAGGGTATGCCACAACTAGATACATCAACATGATTTATCACA400.11227124733355787No Hit
ATCTGAGGGGGGAATTCATCTCCTCTAACTTTGGAGAGGTAGGAAT400.11227124733355787No Hit
TGCGCAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA400.11227124733355787No Hit
AGACTTGGGGAACAGGCCCAAAACAACCCCAGGCTGTTAGAGAAGA400.11227124733355787No Hit
CATCGGGGTCCTGGCTTCCCTCCATGACGTTGTTCAGTAATACGGA400.11227124733355787No Hit
TTTACTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC400.11227124733355787No Hit
TACACAGGGGGGTGTAGTTAAAAGTCCCTACAACTTTTCTGAAGAC400.11227124733355787No Hit
TTTTAAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC400.11227124733355787No Hit
TGTATGGGGAATGCTTTGATAGCTGCAGTCACACTTCTCACAGCAC400.11227124733355787No Hit
GCCACAGGGGCTCGTCCGTGGTCGTTCCGCGCCGTCATGTCTGTCC400.11227124733355787No Hit
CTCAGGGGTTCTGAAGGGACTATAAACAGAGCCCAGTTACTCTAAA400.11227124733355787No Hit
CACCAAGGGATGCCACAACTAGATACATCAACATGATTTATCACAA390.10946446615021893No Hit
ACTCTAGGGATTTCTGTCAGATCCCATCTTCCCCATGCCTGCCAGA390.10946446615021893No Hit
GTACACGGGCGATCTAGTATGGGGGATCTACTCCTGGGGGTAGGAA390.10946446615021893No Hit
TTAGCTGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAG390.10946446615021893No Hit
CTATGTGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCA390.10946446615021893No Hit
TTGTAAGGGATATAGATTTTGTTTTTGTTTCTTCACCTTCAAGGTT390.10946446615021893No Hit
CGCGCTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA390.10946446615021893No Hit
CGATACGGGACCATTTTCTTAACAATAGAGGGAAATGTACTTTCCC390.10946446615021893No Hit
CCATCCGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA390.10946446615021893No Hit
ATGTCCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA390.10946446615021893No Hit
TCTATTGGGGCCCTTTCCCCTGGCTGGCAGCGCGGAGGCCGCACGA390.10946446615021893No Hit
ACTGCCGGGAGGCCTGGAGTTCTAGCCTGACACCCTTCTCTCCAGG380.10665768496687998No Hit
GAGCCAGGGGCTTCTTGTTCTGTGCTCCACACAGGCTTCCCTCCCT380.10665768496687998No Hit
CAACTTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC380.10665768496687998No Hit
TGCTAAGGGCTCGAGCAGCTGCCAGAGCCGCCGGACGGATCGCTGC380.10665768496687998No Hit
GACCAAGGGTGCTCTGCCCTTAGCACACAGTCTGCTGTGTCCAAGG380.10665768496687998No Hit
TTATAAGGGCCTCCGCCCGTCTCTGGGACTATGGACGGGCACGCTC380.10665768496687998No Hit
CTCCTTGGGGGGTATTTGGTAGCAACGCATAGCAAACCTTAGAAAG380.10665768496687998No Hit
CGTGACGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA380.10665768496687998No Hit
TGTTCAGGGGGAAGCTTGTGGGACACAAGGGTTTCCAAGGTCCTGC380.10665768496687998No Hit
ATCCGCGGGAGACTGAGCTCAGGAACTCTTGTGGAAGAGTTGGGGG380.10665768496687998No Hit
TGCAGTGGGGTCTGTCAGTCTGTCCGTGCCTAGGTGAAGGATTTGG380.10665768496687998No Hit
TAACCGGGACTTCCTAGGAGTGTACTGGATGAGCATGTGAATTGAG380.10665768496687998No Hit
TACCACGGGACTCCTATTGTACAAAAAGGACTACGATATGGTATAA380.10665768496687998No Hit
CCATCTGGGGCTTTTCCTCAGCTGCCGCCAAGGTGCTCGGTCCTTC370.10385090378354103No Hit
TCACCAGGGATGCCACAACTAGATACATCAACATGATTTATCACAA370.10385090378354103No Hit
CACCCAGGGGTGATCCTGAGCTCCGAGACTTTCGAGGAAATACCCC370.10385090378354103No Hit
ACAAGCGGGACCTTACCTCACTCCAGAAAACAGTTCTGTAGCTTCC370.10385090378354103No Hit
TTGCTTGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAGA370.10385090378354103No Hit
TTGTCCGGGGGAGAATTAAAATGAACGAAAATCTATTTGCCTCATT370.10385090378354103No Hit
TCTCAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA370.10385090378354103No Hit
TTCCCTGGGGGGAATTCATCTCCTCTAACTTTGGAGAGGTAGGAAT370.10385090378354103No Hit
ACAAGCGGGAATTTAGCAGTTAACAAGGCACCATTGGAAGTGTCTC370.10385090378354103No Hit
TACGCCGGGGCCCTTTTCCGGTCGCGGCGCTGCGCGGTGTGGAGCT370.10385090378354103No Hit
CAGCTAGGGGTGTCTTTCTCTGTCCCATTAAGATTTGGGCACAGAT370.10385090378354103No Hit
TTAGCAGGGGCCCTTTGTGATGGGTGCAGCAGCACCCCCTCATGTA370.10385090378354103No Hit
TGTCCTGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC370.10385090378354103No Hit
GGCAGGGATGATAGAAACATGAAGGACCAGAGTTTAGATCCCAAGA360.10104412260020208No Hit
AAGCCCGGGGGTGTCAAAGTATTTAGCTGACTTGCAACCCTACACG360.10104412260020208No Hit
ACTTTTGGGCAAGGCTTAACCCTCTAGAATGGCTATAGAATATCCA360.10104412260020208No Hit
ACAGCAGGGAACCCAGGCCAATCTCTAACTTGCTATGTAACCAAGG360.10104412260020208No Hit
GGTTGCGGGATGCCACAACTAGATACATCAACATGATTTATCACAA360.10104412260020208No Hit
TTTAAGGGGAGCTTCATTAATGGCTTAGGTTGCAGAAGAAATTCAG360.10104412260020208No Hit
AGTCACGGGATGTAGGAGCATGCTTATCTCTGGGCACCATTACCTT360.10104412260020208No Hit
GCCATTGGGGGGAATTCATCTCCTCTAACTTTGGAGAGGTAGGAAT360.10104412260020208No Hit
TTGCCTGGGCAGTGTAGTCTTAGCAACTGGTGTATATTTTTATATG360.10104412260020208No Hit
CTTTATGGGGTGGGGACTGAAGGAGAGAGATGAATACTGTCCACTG360.10104412260020208No Hit
CACTAAGGGTATCTGACAACGGGACACAGTGATAGTGCAAAACCCA360.10104412260020208No Hit
TCGGTGGGGGAGACCCTGATGCAGTCAACAGGTTCTAGTCATGAAT360.10104412260020208No Hit
CATCAAGGGCATAACCCTAGTATTATTTTTCCCAGACATACTAGGA360.10104412260020208No Hit
ACACGTGGGACTAACATGTGATATAGTGCAAATATAATTGAGAAAA360.10104412260020208No Hit
AGCGACGGGACTTTGTGATGACCTGGATTTGAATCCACTGACTTTT360.10104412260020208No Hit
CATTCCGGGGTTCCTGAGATGCTGGATGTGAAACACTCTGGAAGAC360.10104412260020208No Hit
TTCCATGGGCGATCTATTGGGGGCACGTCTGCTGGGCAAACTGCCT360.10104412260020208No Hit
CCTTACGGGTTACCTGGAAGAAAATAATGGTGTGACTTAAAATATT360.10104412260020208No Hit
GGCACAGGGACCTCAAGATAGCTATAAATGTGGACCAGAAAAAAAT360.10104412260020208No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)