FastQCFastQC Report
Sat 31 Dec 2022
SRR5843030.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843030.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51513
Sequences flagged as poor quality0
Sequence length46
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAATCCGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC750.14559431599790346No Hit
AATGCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA690.13394677071807115No Hit
TAAGCTGGGCGATCTGGCATTGGGGGCAAAGGGTAGAAGAGCAGAG680.13200551317143244No Hit
ACTTTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA650.12618174053151632No Hit
TCATATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA640.1242404829848776No Hit
GTAAAGGGGGATGCCAGTCTTTTTCATTGCCTGTATTATAGCTTTT580.11259293770504533No Hit
TTCAACGGGCTGGGAAACTCTGGTCAGCAGGCTAGGTGGGAAGTGG540.10482790751849048No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)