FastQCFastQC Report
Sat 31 Dec 2022
SRR5843029.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843029.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48420
Sequences flagged as poor quality0
Sequence length46
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAATCCGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC850.1755472945064023No Hit
TCATATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA700.1445683601817431No Hit
AATGCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA690.14250309789343246No Hit
ACTTTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA660.13630731102850063No Hit
ACGCTGGGGATGCCCGTGTCAACCACAACAAGTACATGGTGACTGA560.11565468814539447No Hit
CTGACTGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAG540.11152416356877323No Hit
TAAGCTGGGCGATCTGGCATTGGGGGCAAAGGGTAGAAGAGCAGAG530.10945890128046262No Hit
CTCCTTGGGGTCTCCCTTAAGATTTCCTTTGGCTCGTTCTCTTGAG490.10119785212722016No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)