FastQCFastQC Report
Sat 31 Dec 2022
SRR5843008.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843008.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51600
Sequences flagged as poor quality0
Sequence length46
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATACAAGGGGCACACACACACATATGCACACACACATACATACATT670.1298449612403101No Hit
CTTATCCCTTAGTGAAGGTGAATACCAGAAGTAAACACAGCCTCTG620.12015503875968993No Hit
GCTTATGGGGGCGCGAGGCAGAAGTGAAAAGGAGGTGGGGGCCTCC590.11434108527131784No Hit
GGATCTGGGGTTGTTTCTAGGAAATGATTAAATTGGGGGGAGAGAA580.11240310077519379No Hit
TGCAATGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT580.11240310077519379No Hit
CAAACTGGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAAG560.10852713178294572No Hit
CTCGCTGGGGTAAAATGCAATTACTTCATCCGTAGCCCTCTCACCT560.10852713178294572No Hit
TTATCCGGGGCGTTCAGTTTGAGACACCATTTGCAGCTGGAAATGG550.1065891472868217No Hit
CTCCCCGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT550.1065891472868217No Hit
ATTAAAGGGGGGCTGCGAGGAGCGGCCGGTGGTGGCGGCAGGAGCG540.10465116279069768No Hit
TCGCATGGGGATCAGCCTTGTGACAAAGAGACCTGTGACTGTGATG540.10465116279069768No Hit
TTAACTGGGGAGTAAAGTCAGATGAACCAGAGGAGAGGCAGATGTC530.10271317829457363No Hit
TTCTACAGGGATTGGTTCTGGTTTAAGACCTCTGACACTGGGGAAG530.10271317829457363No Hit
ATTAGCGGGGCAGTTTGAATCGCGGTCCGACGGAGGAGTGGGCGCT530.10271317829457363No Hit
CAATCGGGGGGCAGTGGTGCTGGGAGTCTCGTGTCCGTGGTGCCGT520.10077519379844961No Hit
CACAGGGGGATGTGAAGCAGTTCTATGACCAGGCCCTTCAGCAAGC520.10077519379844961No Hit
CATGCTCGGGGCAGTTTGAATCGCGGTCCGACGGAGGAGTGGGCGC520.10077519379844961No Hit
TGGCCTGGGATTCTGGCCTCACTGTCCACCTTCCAGCAGATGTGGA520.10077519379844961No Hit
GCTCAAGGGGTGACAAGCCTGGCTTGGGTGGTAGCGTGGATAGTGG520.10077519379844961No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)