FastQCFastQC Report
Sat 31 Dec 2022
SRR5843007.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843007.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49522
Sequences flagged as poor quality0
Sequence length46
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATCCCTTAGTGAAGGTGAATACCAGAAGTAAACACAGCCTCTG780.15750575501797182No Hit
ATGCGCGGGGGTGGTGTTCCGGGCGATGTCTTGGTTTCGAGCGGCT650.13125479584830985No Hit
CTTTATGGGGAGTGACAACTTTGGTTCGAGTTTGTGATGCTACATA600.12115827309074755No Hit
CTTCCTGGGCAGGGCCCAGTGAAAAAGCCCTGAGCTTTGTCCTGAA600.12115827309074755No Hit
ATACAAGGGGCACACACACACATATGCACACACACATACATACATT590.11913896853923509No Hit
GTGACTGGGGGAGATAACCCTGCCCAGTCAGATTTAGAATTGAGTT560.1130810548846977No Hit
TTCCATGGGGTCTTGGAACATGGTGCCTGTTGGCAGAACTTAACGT550.11106175033318524No Hit
AGGCCAGGGGAGTCCTGCTGAAGCCAGTTTGAGAAGACCACAGCAC540.10904244578167278No Hit
TTATCCGGGGCGTTCAGTTTGAGACACCATTTGCAGCTGGAAATGG530.10702314123016032No Hit
TTCTCCTCGGGGAGCCCACCACATATTCACAGTAGGATTAGATGTA520.10500383667864786No Hit
ACGCGTGGGGCTTTTGAGCGGCGGCGGCCCGAGCTAGTGCGTCCGC520.10500383667864786No Hit
GGTCTCCCGGGAAGGATTGAGCAGCTATCACCATTCCCCTTTGACC520.10500383667864786No Hit
CACAGGGGGATGTGAAGCAGTTCTATGACCAGGCCCTTCAGCAAGC510.1029845321271354No Hit
TATTTAGGGACTACCAAAAAATACATGCATGTTTGCAGCTTGGAAA510.1029845321271354No Hit
AAGTATGGGGGCGCTCACAATGGAGCTCTCGGAGTCTGTGCAAAGA510.1029845321271354No Hit
GCCAGTGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC510.1029845321271354No Hit
TGCCCAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC500.10096522757562294No Hit
TTAACTGGGGAGTAAAGTCAGATGAACCAGAGGAGAGGCAGATGTC500.10096522757562294No Hit
TTAGCTGGGGATCTTAGCCAGGGGAGGATGGCTGAGGGAAAGGCTG500.10096522757562294No Hit
TTGCATGGGAATGGGGAGGAGCTGACCCAGGACATGGAGCTTGTGG500.10096522757562294No Hit
CATTCTGGGGAGAAGGCAAACTTCAAATTGAGCTGGCTCAGCTGCA500.10096522757562294No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)