FastQCFastQC Report
Sat 31 Dec 2022
SRR5843004.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843004.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40467
Sequences flagged as poor quality0
Sequence length46
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGCTGGGGATGCCACAACTAGATACATCAACATGATTTATCACAA660.163095855882571No Hit
CCGCATGGGGATCATATTTTGCCGACAAAATATGGATTGAAAGATG610.15074010922480047No Hit
ATTGCAGGGAGACGTTCTTCGCCGAGAGTCGTCGGGGTTTCCTGCT550.1359132132354758No Hit
TGTGCAGGGACAGCAGTCCATGCTGTCTTAGCAGTCAGCCACCGTC550.1359132132354758No Hit
CTAAACGGGATGCCACAACTAGATACATCAACATGATTTATCACAA530.1309709145723676No Hit
TCCTAAGGGGTGTTCCGACTTTCCGGGTAAAGATGGCAGAGCGCGG510.1260286159092594No Hit
TGTGGTGGGGTGAATGGGCAGAACGTGGAGGGGCTGCGACATGCCG500.1235574665777053No Hit
ATCACCGGGGAGTTGGGGCCGTGTTCCTGTGTCCGCTGCTGGGTCA490.12108631724615118No Hit
TGTACCGGGATGGGAACCATATGTGCTAGGCACCTTAAGTTCTCAC490.12108631724615118No Hit
TAATACGGGGGGAGGTCACTCGTGCAGAAGGAAACCCTGCCACCAG490.12108631724615118No Hit
ATTTAAGGGGCCGGCCGCCGGCTTGGAAAAAGAGTTATGGCTAAAC480.11861516791459709No Hit
GAACTTGGGGTCCGCTTCCGGTTTCTGGGCTCTGCTGGCTGCCTTC470.11614401858304298No Hit
CGATAAGGGGTGGAAGGGCCACCCAGGATCAAGGTCGGAAAGAAAT470.11614401858304298No Hit
TGCATCTGGGGGGGGCTGACGTCAGGAGCCAAAATGGCGGCGACGG470.11614401858304298No Hit
GCTTTGGGGGCGTGCGTCCTCACTCTGAGTACCCCTCTGTCTACGC450.11120171991993476No Hit
AGCAATTATCCCCATACTAATCAACAAAAAAAACCCACGATCAACT450.11120171991993476No Hit
GCTACTGGGTCGGCAGCTCCGAGTCTTCCGCCCCTCGGCTCTGGCC450.11120171991993476No Hit
TGCTGCGGGGTGTGAGCTGGACGAGAGCAACACCCCCATGTGTGTG450.11120171991993476No Hit
CACTATGGGAGATTCTAAGGATCATGTCTGCGAGTCAGGATTCTCG450.11120171991993476No Hit
TATACTGGGGGATTGAGAAGTAGACACCCTGAGCATTGTGTGAGTT450.11120171991993476No Hit
GCGAAAGGGATGCCACAACTAGATACATCAACATGATTTATCACAA450.11120171991993476No Hit
AAATATGGGGAGGTATCCTGACCCTGAAGTACCCCATTGAACATGG450.11120171991993476No Hit
TTAACAGGGAGGCGAGTAGCTAGCGCTCAGGCTCGGCAAGGAGCAA450.11120171991993476No Hit
GCTGCTGGGGGGACTGCAGCCCTGTGCAATGTCAGCCAAGTCAGAC450.11120171991993476No Hit
GCAAAGGGGGCGCACGTCGAGCGGGGGAGCGGCGCTGCCTGTGGAG450.11120171991993476No Hit
TTTGCGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCT450.11120171991993476No Hit
CTTTAAGGGGAATGCACCATGCCGCTGGAACTGGAGCTGTGTCCCG440.10873057058838065No Hit
CTCCTAGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT440.10873057058838065No Hit
TGCCATGGGGGGAGTTCCGGTCTGGCTCTAGCAGAGTATTAATTAC440.10873057058838065No Hit
AACACTGGGACATGACAGTTGTATACCTTTCTCTTGTATCTGACAC440.10873057058838065No Hit
GCACTGCGCGCCGGGCATGGAGTGCGTGAAGAGCCGCAAGAGGCGG440.10873057058838065No Hit
CATAAAGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT440.10873057058838065No Hit
TACATTGGGGAGGCCTGATGGATTTTGCTTTCCAGTACATTAAGGA440.10873057058838065No Hit
ATACAAGGGGAGACGGCGGCTGAGCCGCGGCAGGAGAGTACTGAGA440.10873057058838065No Hit
GTCAATGGGGTAGATGAAGCTGCATGAGTCACCCCATTCATCACTT440.10873057058838065No Hit
ACGCAGGGGACTCGTGCAGAAGGAAACCCTGCCACCAGCCTCGGGA440.10873057058838065No Hit
CGTTCTGGGGGCGGTGAAGGAGGAAGTGTTTTGCTGCGGGGTCCTG440.10873057058838065No Hit
AGGGGAGCGGCGCGCGGCTGCAAGATGGCGGTGCAGATTTCCAAGA430.10625942125682655No Hit
CGTCCCGGAGGAGCCGCGAATCGAAATGCTTCACGGAACCACCACC430.10625942125682655No Hit
CGCTTAGGGCTCCTGTTTTGTTTTTAACTTTTCTTTTTACACTGAT430.10625942125682655No Hit
ATGGCTGGGGAGTCTACAGGCCCAGAGCAAGTGAACACAGAGGAGG430.10625942125682655No Hit
TATCCAGGGGCTTTGCAGACGCCACTGTCGCTTTTCGCCGCTTGCT430.10625942125682655No Hit
ATGCACGGGGTCTTGAGAAGAGAAGATCTTCATTTCAGGTTTACAA430.10625942125682655No Hit
AAATCCGGGTCGATCCTGACCGTCAGCTTGTCCTACATGGTGGGCA430.10625942125682655No Hit
ATAGAAGGGGGTTTTGTTTTTTTTGTTTATTCCCTTTTCACTGGTC430.10625942125682655No Hit
ATCCGCGGGGAATTCATAAAGCAAGTTAGGATTCACAAATGTAGTG430.10625942125682655No Hit
GTAGAGGGGTCCCACTCATCGAAATCCCGCTCCATAGTTGGTGGGT420.10378827192527244No Hit
CTATGGGGGATCTGACGGCGGGGGGCGCTACTTCGGAGGAGCCCGA420.10378827192527244No Hit
TCACTGGGGTAACGGATTGTTGTTGGTTATGAAGTTTTGAGAACTA420.10378827192527244No Hit
CACCTCGGGGTTTCCTCAGGAGCAAGGTCACACAGGTCAGATTATT420.10378827192527244No Hit
AGCCGCGGGGGGCCGATCAGTGAGGACTTGCGAAGTGGGCTGCAGA420.10378827192527244No Hit
AATATGGGGGGGATTCGGTGGGCCTGTTGCGGGGCTCAGATGATGA420.10378827192527244No Hit
CAACATGGGATGCCACAACTAGATACATCAACATGATTTATCACAA420.10378827192527244No Hit
CAAATAGGGGTCTGATTATATTTGCAACATGTAACTTGGATTAATG420.10378827192527244No Hit
TTATACGGGGTCTCTGCGGGGGCGGGGCATCACAGGTGTTTGGGAA420.10378827192527244No Hit
CTTCTTGGGCATGGTCATTCGGGAGGACAACCAGACTAACCGCCTG420.10378827192527244No Hit
TTTTGCCGGGGAGTCCCTGGAGCGCCAGATGCGTGAGATGGAAGAG420.10378827192527244No Hit
AGCGCTGGGTCGGGACAAGAAGAGAACCTTCCCCTTGTGCTTTGAT410.10131712259371835No Hit
ACTGCTGGGAGGAATTTTACCTTTTGGATCAATCTTTATTGAAATG410.10131712259371835No Hit
CAGTCAGGGGGAGTGCACATCGAGACTGTGGCCATGGAGGGAAACA410.10131712259371835No Hit
CAACAGGGGTATGCCACAACTAGATACATCAACATGATTTATCACA410.10131712259371835No Hit
CGAACTGGGGGCCCTGCGTGGGGAGCGGGGGATGGGGCAGCCTGCT410.10131712259371835No Hit
ACTTTAGGGACAAAGCATGCGCGCTTGTCCACGTCTGGAGTCGTCA410.10131712259371835No Hit
GCTTTAGGGGTTTTATGACAGTAACACGTGGGAAAAGATCCTCAAG410.10131712259371835No Hit
CCCTACGCAACTGGTACCAAGGAGACAACCACAACAAACCTATGAA410.10131712259371835No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)