FastQCFastQC Report
Sat 31 Dec 2022
SRR5843000.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843000.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41347
Sequences flagged as poor quality0
Sequence length46
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TAGTATGGGGGGACTGGGACACCTGTAGCAGACAAAGCAGCACTGA510.12334631291266596No Hit
CTTGAGGAGGGGGTGAGATGTCATGGCTTCCTTCTAGGCTGCGGGA470.11367209229206472No Hit
CTATTTGGGGAGGAAGATTTTTCAAGAAAGAAGTGCCTGGCTTGGT470.11367209229206472No Hit
AACGTCGGGCAACGGCATGATCCCTATGACCGCGTCATGCTAACTG470.11367209229206472No Hit
CTAAGCGGGGCTTTTGCAGACGCCACTGTCGCTTTTCGCCGCTTGC470.11367209229206472No Hit
GTTGTTGGGGATTCAGAAGGCTGTATCCGCTTGGAGTGCCCAGAGA460.1112535371369144No Hit
CCTTGGGGATGCCACAACTAGATACATCAACATGATTTATCACAAT460.1112535371369144No Hit
CTTACTGGGAGCTGTGTAGGCAGGGTCAGGGACCTAACAAGACCAG460.1112535371369144No Hit
GCTATAGGGTAACAGAGTCTGTGCTAGTGAACTTCTTTGAGAAGAG450.1088349819817641No Hit
CGAACAGGGATGTGGGCTCCGGGCCTCCCAGTGGCACAGGTCTCCA450.1088349819817641No Hit
TCGTCAGGGCTTCCTTCCTAGATTGCAGAGCTTTCATATCCACGAT450.1088349819817641No Hit
CTTACCGGGGCTCAGGCGAGTAGCTAGCGCTCAGGCTCGGCAAGGA450.1088349819817641No Hit
ATACTGGGACTCGTGCAGAAGGAAACCCTGCCACCAGCCTCGGGAT450.1088349819817641No Hit
TTACTAGGGGTATGGCCTACCCATTCCAACTTGGTCTACAAGACGC440.10641642682661379No Hit
ATCGTGGGGGCGACTGTGAGAAGCTGGAGGAACAAAATCTGGAGGG440.10641642682661379No Hit
GTCTAAGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCA430.10399787167146347No Hit
AACTTTGGGTTTCTTGTTAACTGGTTAAAGTGACAGTATCTTTTTT430.10399787167146347No Hit
CTCGCAGGGGGGTAAAGATGGCAGAGCGCGGTTACAGCTTCTCGCT430.10399787167146347No Hit
TGTAGCAAGGGCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCT430.10399787167146347No Hit
TTATCAGGGGGGAATTCGATTCAGCCTGACGTACATAGACGAGATA430.10399787167146347No Hit
TTATCCGGGTACATCAGCCACTATAATTATCGCAATTCCTACCGGT430.10399787167146347No Hit
CTTTTAGGGGATGCAGCGAAGCCCTTCAGCGTGGTGGTCTTCCACT420.10157931651631315No Hit
CGGCATGGGGGTGGGAGAAGATGGCGGCCGCCGTCCGCTTTCGGGT420.10157931651631315No Hit
TGTACAGGGAGGGGTCGGCGGCGTGGCAAGAGGACAGGGCTATGGA420.10157931651631315No Hit
CGCTAGGGGCCTGTGGGTTGGTTGTGACAGCATCTTCACCACTTTG420.10157931651631315No Hit
CAGATGGGAGGAGCCAAAATGGCGGCGACGGTCGGGGTCTCCTTGA420.10157931651631315No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)