FastQCFastQC Report
Sat 31 Dec 2022
SRR5842996.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5842996.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42464
Sequences flagged as poor quality0
Sequence length46
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATTAGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT780.1836850037678975No Hit
AGACAGGGGGACCAGGTCCAGGAAGAGCTGCAGAGCTCCCAAGTCA630.14836096458176337No Hit
CGTGGACTGCTTCATTTCGAGGCCAACTGAGAAAACGGTGTTCACT580.136586284853052No Hit
TTAGCAGGGAGGGCCAGCGGCAGATTTCAGATTTTGCAGCCTAAGG580.136586284853052No Hit
CGCTATGGGGCCGGGAATCGAGTTTCCAAACGTGCGGGGGCCTTCG570.13423134890730973No Hit
GTGTTGGGGGAAGAGCAGCGTCTGTTCTGCACCAACTCAGAGTCTT570.13423134890730973No Hit
TATTGCGGGGAGTTCCTAAACTTCACTGGAGTTCGGAAAGTGACAC570.13423134890730973No Hit
ACACGTGGGCTCCCGGTGGCTGCTGAAGCAGGGTGAGCTGCAGCAG570.13423134890730973No Hit
CTGGCAGGGAGGTGCTGGCAGTGATGCAGGCTTAGCAGCTTACAGC560.13187641296156744No Hit
CCAAATGGGTGCGACTGCAGATGAACCAGACCCTGCCTGTGCAGGT550.12952147701582517No Hit
CAGTCAGGGGGCGTGATTCCGTCCTGCGCGTCTGTTCTGTGGAACA530.12481160512434061No Hit
CTCGTTGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT530.12481160512434061No Hit
ACCAACGGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGC530.12481160512434061No Hit
CGCGCTGGATGGGCTCTTGGAACGCTGTGCTCAGTATAAGAAGGAC520.12245666917859833No Hit
TCTGCCGGGTCTGCACCAACTCAGAGTCTTGTTGGAGCTTTATCCC520.12245666917859833No Hit
ATGTCAGGGGAGTCCTGCTGAAGCCAGTTTGAGAAGACCACAGCAC520.12245666917859833No Hit
GCCTTCCTACTACCATGGTCCATGCTGCCTGATGTTATCGATGACT520.12245666917859833No Hit
GGTCAGGGGGCTCACATCTAGCAAAGCCAAAGAGCTGAAGGACCGT510.12010173323285607No Hit
TTACGAGGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATAC510.12010173323285607No Hit
ACATTTGGGATGCCACAACTAGATACATCAACATGATTTATCACAA510.12010173323285607No Hit
ACCCGCGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC510.12010173323285607No Hit
GTCAATGGGAAATAAGAAGGCAGCAGCTTCTGCTGAGGTGCAAAGG500.1177467972871138No Hit
GTTAAAGGGAACTTCGTGCACGACTGCGTCAATATCACCATCAAGC500.1177467972871138No Hit
AAAGCTGGGATGCCACAACTAGATACATCAACATGATTTATCACAA490.11539186134137151No Hit
GTGCTCGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACAT490.11539186134137151No Hit
TTTGCTGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC490.11539186134137151No Hit
TGTTCAGGGGGGAGTGTGTGACTATCTGGATTAGGAGCAACCTGAC480.11303692539562923No Hit
TTTGCCGGGGCTGGATACTTTGAACATTAGGAGGCCACTAGTAAAG480.11303692539562923No Hit
AATGTTGGGTCTGCACCAACTCAGAGTCTTGTTGGAGCTTTATCCC480.11303692539562923No Hit
AAGACCGGGGACAGGGCCCGGTGGAGCTGGGAATGTCCCGGGCGGA480.11303692539562923No Hit
GACTTTGGGGAGTATCATGGGAACAACCAGAGCAACTTTGGGGAAG480.11303692539562923No Hit
AATAACGGGGGGGAAGGATCTCCAGAGTGGGAAAAAAGTGAACGAC470.11068198944988697No Hit
TTTCACGGGTAACCTAGCTATTTGCCAGTGGGGCTTTGACGATGAA470.11068198944988697No Hit
CATTTCGGGGGGAATTCCAGCAGCGATTAAGGCAGAGGCGTTTGTA470.11068198944988697No Hit
CATCAAGGGTAGCTCTGGCTGGCCTGGAACTCAGCATTTAGACCGG470.11068198944988697No Hit
GAAGCTGGGGCACAAAGCTTGTTCCGTTAGCTGGCATAAGATTCCA470.11068198944988697No Hit
AGTCATGGGGCAAGCACAAATACAGCACAGTGCGCAACTCTGCAGC470.11068198944988697No Hit
TTTCATGGGGTGTTAGATATTGAGGCTGCTTCGTGTCGGCACGAAG470.11068198944988697No Hit
CACTCCTGGCTGCTGTATACAAGGCCCTGAGTGACCATCATGTATA470.11068198944988697No Hit
CAAGCCGGGATGCCACAACTAGATACATCAACATGATTTATCACAA470.11068198944988697No Hit
TTCAATAGGGATGCCACAACTAGATACATCAACATGATTTATCACA470.11068198944988697No Hit
ACAGCAGGATTGTAGTCGTTTCTTCCAAACTTTATAAATATGGAGA470.11068198944988697No Hit
CACAACGGGGGTTCTGCACCAACTCAGAGTCTTGTTGGAGCTTTAT460.10832705350414468No Hit
ATCAGTGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT460.10832705350414468No Hit
TTGCTAGGGGGTGGAACTCCTCCTGCATTCAACCGTCCAGCTCCGG460.10832705350414468No Hit
TACTAGGGGGAGAGTGAACCGCGGAGAAGGTGAAGATGGCTGCCGC460.10832705350414468No Hit
ACATGTGGGGGCGAGGAGCGGCCGGTGGTGGCGGCAGGAGCGGCGG460.10832705350414468No Hit
GCTGATGGGGAAGTTCCACGCTCTGCTAAAGGAAGAGTTCAGTTCT460.10832705350414468No Hit
AGCATCGGGAATCGCGCTTCCGCCATCTTTCCAGCTCCAGTCGGAC460.10832705350414468No Hit
TCTCGCGGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAAC460.10832705350414468No Hit
CTGTCTGGGGGCGGACGGGCGGAACAAGTGTGGTTGCACCGACACC460.10832705350414468No Hit
TGAACAGGGGTGCCTCTTAGCCACTGAATTGCTATGTTATCCTTTC460.10832705350414468No Hit
TTCACGGGGCTCTTAGAACCCTATTGTGCCACTTCCCTCGGAAGAT450.10597211755840241No Hit
CTTTGCGGGGGGGTGCAGGGCGGCCACTGGAGGAGAGCAAGCTGCT450.10597211755840241No Hit
TATATGGGGGAGCCCACCACATATTCACAGTAGGATTAGATGTAGA450.10597211755840241No Hit
AAATTAGGGGACGGGAGACGGCGGCTGAGCCGCGGCAGGAGAGTAC450.10597211755840241No Hit
CAGTGGGTTTGGAAGTAATTTTGTATCTGCTGGCATACAGACCAGT450.10597211755840241No Hit
ATGCATGGGACCCCAGGAGAGCGAGGCTGCGGATCTATCTACCTCA450.10597211755840241No Hit
GCCACAGGGGGGACCTCTGTGGATTGAGATTCTGGGAGGCTGTAGC450.10597211755840241No Hit
TTTCGCGGGGGCTGGAGGAGGTGGACTCACAGGAGGCAGGCCCAGA450.10597211755840241No Hit
AGAGTCTGGGACATCTCAAGCCGAGAGTCAGAGAACGAGGAGGAGA450.10597211755840241No Hit
TGCCAAGGGGGCCCTTGCAAATGCTTCCCATCCCTCCTGCATCTGG440.10361718161266015No Hit
ATCATGGGGATGCCACAACTAGATACATCAACATGATTTATCACAA440.10361718161266015No Hit
TTTCTTGGGAAGGCAGCTGGGGCACCAATGGCAACTCTGTCCCCAT440.10361718161266015No Hit
ATTACTGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCT440.10361718161266015No Hit
TCTCCGGGGATAGGTTTGGTCCTAGCCTTTCTATTAGCTCTTAGTA440.10361718161266015No Hit
TCACTAGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT440.10361718161266015No Hit
AAATATGGGATGCCACAACTAGATACATCAACATGATTTATCACAA440.10361718161266015No Hit
AACCGTGGTCGGAAAAGAGTCTGACAGCGTCCTGCGGGTCCTTTCC440.10361718161266015No Hit
CATAAGGGGGACCTAGGGACTGTGGGAAGTGGGTGGTAGCAGGAAA440.10361718161266015No Hit
CGCATAGGGGACAGCTGACCCCATCAAGAGTCCGGAGAGCCTCCAG440.10361718161266015No Hit
CATCACAAACATTCCCACTGGCACCTTCACCAAAATCACTAACAAC440.10361718161266015No Hit
ATCACAGGGAGGAGAGTACTGAGAAGCGTCGGGGAGCGCAGGCCCA440.10361718161266015No Hit
GGATACGGGGGCTTTGCAGACGCCACTGTCGCTTTTCGCCGCTTGC440.10361718161266015No Hit
CACAATGGGATGCCACAACTAGATACATCAACATGATTTATCACAA440.10361718161266015No Hit
ATGTCGGGGGAGACTAGCTTGGAGGAGAACGGCTGGCCTGATGGAC440.10361718161266015No Hit
AGATCAGGGGGGACTATGTGGCCCCACTCAAGAAGGAGGTATATGC440.10361718161266015No Hit
TTAGCGGGTCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAGGA430.10126224566691786No Hit
AAATATGGGGAGGGACCTGCTAGGGACCTCGGAGTCATGGACCCCA430.10126224566691786No Hit
ATTTGTGGGGACTCTTTTTCCGGTTCGGGACGTAGTTGAAGCAACG430.10126224566691786No Hit
TTACCAGGGTATGCCACAACTAGATACATCAACATGATTTATCACA430.10126224566691786No Hit
ACTCGCGGGTGAAGTTCGATGAACAGAAGCTTGTGACAGGCTCCTT430.10126224566691786No Hit
TCAAGTGGGTTATCACACCGGAGACTTAGAGCAGGTAGTCTGATTA430.10126224566691786No Hit
CACTTAGGGGCTCCCAGATTTCCAGAAATGGATAATGTTTTCATTT430.10126224566691786No Hit
ATCACAGGGGGCACCAACTCAGAGTCTTGTTGGAGCTTTATCCCTT430.10126224566691786No Hit
ATAAGAGGGACAATAACAGTATGGTCTGCTCATTCTTGCCGGAAGT430.10126224566691786No Hit
GCTGACTGGGCACGTACCCACGTACCAGTGTTCTTCAGCCTCAGTT430.10126224566691786No Hit
TCATTAGGGGCTTTTGTGACTGGCGGTGAACGAGTGCGCAGTGCCA430.10126224566691786No Hit
TACATCCGGGTCCAGTGACATTTTATGCCTGGGAGGTGGATTCTTC430.10126224566691786No Hit
GCAGTCCCTCTGGCGAGTTTGAAGAGCTTTAACAACTCAATTTAAC430.10126224566691786No Hit
CCTAAGCTTTTCATAAAGCCCACCACAGGTATACTTCTGATGAATT430.10126224566691786No Hit
CATATAGGGGGCTGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGG430.10126224566691786No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)