FastQCFastQC Report
Sat 31 Dec 2022
SRR5842995.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5842995.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40253
Sequences flagged as poor quality0
Sequence length46
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATTAGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT650.16147864755421956No Hit
CTGGCAGGGAGGTGCTGGCAGTGATGCAGGCTTAGCAGCTTACAGC610.15154150001242145No Hit
GTTAATGGGACATTCAAATGAGCATCCTAGTCACCGCGTTTAAAAT600.1490572131269719No Hit
TTCGTTGGGAGAGGTCTCATGCTGGTTAATCAACTCATAGATCTTG580.14408863935607286No Hit
TTTCATGGGGTGTTAGATATTGAGGCTGCTTCGTGTCGGCACGAAG550.13663577869972424No Hit
ATCTTAGGGGGAGCCCGGATTGGAGCCTTGGCTGCCGTTGAGAAGC540.13415149181427471No Hit
ACATGTGGGGGCGAGGAGCGGCCGGTGGTGGCGGCAGGAGCGGCGG530.13166720492882517No Hit
ACTCGCGGGTGAAGTTCGATGAACAGAAGCTTGTGACAGGCTCCTT530.13166720492882517No Hit
CACTCCTGGCTGCTGTATACAAGGCCCTGAGTGACCATCATGTATA530.13166720492882517No Hit
CATCACAAACATTCCCACTGGCACCTTCACCAAAATCACTAACAAC520.12918291804337564No Hit
TGCTCAGGGGATCACTGGTATGAATAGGGACTTTGAAAATAACAAC480.11924577050157752No Hit
GCCTTCCTACTACCATGGTCCATGCTGCCTGATGTTATCGATGACT470.116761483616128No Hit
TATATGGGGGAGCCCACCACATATTCACAGTAGGATTAGATGTAGA460.11427719673067847No Hit
GGTCAGGGGGCTCACATCTAGCAAAGCCAAAGAGCTGAAGGACCGT460.11427719673067847No Hit
GCCTGTGGGGAGCCCACCACATATTCACAGTAGGATTAGATGTAGA460.11427719673067847No Hit
TAAAACGGGCAGTCAAGAAATGGAGCCTGTGATAACATGCGACAAA460.11427719673067847No Hit
ATGACAGGATGACAAACATACGAAAAACACACCCATTATTTAAAAT460.11427719673067847No Hit
GTTTATGGGAGTGCAGGGATAGTTTGGCTGTGAGACTCACAGATAG460.11427719673067847No Hit
CAACCAGGGGCTCTCGCCAGGCGTCCTCGTTGGAGTGACATCGTCT460.11427719673067847No Hit
CTCTCTGGGGTCAGATCAGAGTGGAATCACTGGTCTCAACCGTGTT460.11427719673067847No Hit
CTGGCCGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC460.11427719673067847No Hit
CTCGCAGGGGAGGAAGGAAGCAACCATGCAAGTGCTAACGAAACGC450.11179290984522892No Hit
TTTTACGGGCTCTAGCTAAACAATAAATGTACCTGTCTCAGTCCGC450.11179290984522892No Hit
ATGCATGGGACCCCAGGAGAGCGAGGCTGCGGATCTATCTACCTCA450.11179290984522892No Hit
CTGCTTGGGGACGGTAAAATAGGAAATTGAAGGCAAACACTGGATG450.11179290984522892No Hit
TTAGCAGGGAGGGCCAGCGGCAGATTTCAGATTTTGCAGCCTAAGG450.11179290984522892No Hit
GCAGTCCCTCTGGCGAGTTTGAAGAGCTTTAACAACTCAATTTAAC450.11179290984522892No Hit
ATTTTGGGGGCCGCGGCGGCTTCCGCGGAGGATTCGGCAGCGGTCT440.10930862295977939No Hit
ATTAACGGGGATCTGGTGCTGGGGGTCTCGGGCCTGAGTTCGTAGG440.10930862295977939No Hit
TCACTAGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT440.10930862295977939No Hit
CACCCCCAGCTGTCCCAGGGGTGACTTTCCTGTCTGGGGGTCAGAG440.10930862295977939No Hit
GCTATAGGGAGATATAAAATTGTGGAGACAACTGTTAAAAGACATT440.10930862295977939No Hit
CTTATTGGGGGGAATTCACTGTCCTTTCATCCATAAGCGGAGAAAG440.10930862295977939No Hit
GTGCTCGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACAT440.10930862295977939No Hit
CTTTGCGGGGGGGTGCAGGGCGGCCACTGGAGGAGAGCAAGCTGCT430.10682433607432987No Hit
ACTGCAGGGGGTCTGAAGGCCGAGGCCAAGATGGCGGCGCTGGCGG430.10682433607432987No Hit
AACAGAGGGTCAAGAAGAAGGAGCTACTCCCCACCACCAGCACCCA430.10682433607432987No Hit
TATTGCGGGGAGTTCCTAAACTTCACTGGAGTTCGGAAAGTGACAC430.10682433607432987No Hit
ACTTATGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA430.10682433607432987No Hit
TCTGCCGGGTCTGCACCAACTCAGAGTCTTGTTGGAGCTTTATCCC430.10682433607432987No Hit
AGTCATGGGGCAAGCACAAATACAGCACAGTGCGCAACTCTGCAGC430.10682433607432987No Hit
AAACTTGGGCAGTAGCCCAGGTCTTGGCAGTAAGCGCGGCTTGGAA430.10682433607432987No Hit
GCAGCAGGGGCCCACTGCTTCGACCTCTGCCGCCGCCACTGCCGCC430.10682433607432987No Hit
TTCAATAGGGATGCCACAACTAGATACATCAACATGATTTATCACA430.10682433607432987No Hit
ATACTTGGGGCGGGAAAAGATGGCCGCGCCTGCAGCGTCCGGACTG430.10682433607432987No Hit
CAAATAGGGTCTGCTTCCGGGGGGAATTCAGATAAAACGAATAGCT420.10434004918888032No Hit
ATTAGAGAGGGCGGGGAGAGCCATGGTCTTCCGGCGGCTGCTGGCG420.10434004918888032No Hit
GTATATGGGGTTCTTTTTTGGGGTCGTGGCCTTGCTCCTGCCCTGC420.10434004918888032No Hit
AGCATCGGGGGCTTTCGTTAGAGAGCCAGGCATAATGGAAAAGTGT420.10434004918888032No Hit
CTTGCTGGGGGGAATTCCCCGGGCCAATTGCCTCTATAACTAGAGC420.10434004918888032No Hit
TCGCAAGGGGTGACCCGTGTCTTTAGCCCTAAGGCGCGAGAGAGCA420.10434004918888032No Hit
ACACGTGGGCTCCCGGTGGCTGCTGAAGCAGGGTGAGCTGCAGCAG420.10434004918888032No Hit
TGCTAAGGGGTGTGGAAGTTGGTTTTTTCAGTGTCACCTTGTGGTC420.10434004918888032No Hit
ATAAGAGGGACAATAACAGTATGGTCTGCTCATTCTTGCCGGAAGT420.10434004918888032No Hit
TCATGGGGGCTCTCTTTCCGTTCCTAGCGCAGCCATGGCTCGTGGT420.10434004918888032No Hit
TACATCCGGGTCCAGTGACATTTTATGCCTGGGAGGTGGATTCTTC420.10434004918888032No Hit
CCAACAGGGAGAGGAAAAGTGAGCTGTGCTGTGGCTCCCGCGGCTG420.10434004918888032No Hit
TACAAGGGGTAATAAAAAGACATTGTCAACTACAGTGCTGAAAACT420.10434004918888032No Hit
TGCCAAGGGGGCCCTTGCAAATGCTTCCCATCCCTCCTGCATCTGG410.1018557623034308No Hit
CCGCCTGGGGCTGCAAAGCTCAGCAGCACGGAGGGAGCGAGATCCA410.1018557623034308No Hit
GTTTTCAGGGGGACTGCAGGAGCTCCGCAAGGAGGAGGAAACCCTG410.1018557623034308No Hit
CGTTACGGGTCTGTTTTCTATCGGAACCAGCACAAAGAGTATTTTG410.1018557623034308No Hit
GCACATGGGGTCGCCCACGACCCTTATGAATTCCTTCAGTCTCCAG410.1018557623034308No Hit
CTCGTTGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT410.1018557623034308No Hit
GAAGCTGGGGCACAAAGCTTGTTCCGTTAGCTGGCATAAGATTCCA410.1018557623034308No Hit
CACTTAGGGGCTCCCAGATTTCCAGAAATGGATAATGTTTTCATTT410.1018557623034308No Hit
GGCATTAGGGGCGGAACACATCGTCTCTCCGCCATGGCGGCCCTGC410.1018557623034308No Hit
AGACAGGGGGACCAGGTCCAGGAAGAGCTGCAGAGCTCCCAAGTCA410.1018557623034308No Hit
ACTAGTGGGGAGTCCTGCTGAAGCCAGTTTGAGAAGACCACAGCAC410.1018557623034308No Hit
TCATTAGGGGCTTTTGTGACTGGCGGTGAACGAGTGCGCAGTGCCA410.1018557623034308No Hit
CTTCTTGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC410.1018557623034308No Hit
TACAATGGGGGGAATTCGAGCTCTTTCGACGTTTTGAAGGAGGGTT410.1018557623034308No Hit
ATGGATGGGGTGGCCTGCGTGTGTTCTCCGGCTACTTAGTCGGCAC410.1018557623034308No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)