FastQCFastQC Report
Sat 31 Dec 2022
SRR5842994.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5842994.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22832
Sequences flagged as poor quality0
Sequence length46
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACTCTGGGATTCTGAGCCCGGGCATCGCCCCTCGTTTATGAACTA540.236510161177295No Hit
GTACCTGGGTATGCCACAACTAGATACATCAACATGATTTATCACA480.21023125437981782No Hit
TGCTCCGGGGAGCCCGGGCATCGCCCCTCGTTTATGAACTAGCCTA470.20585143658023827No Hit
CAGCCTGGGGACTTCTGATTCTGACAGACTCAGGAAGAAACCATGG470.20585143658023827No Hit
AAGCTTGGGGTCATGTGTTGAATGGTTGGGTCTTGTGAAGTCTGAG440.19271198318149965No Hit
TAGTAAGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCA430.1883321653819201No Hit
GTATTGGGGATGCCACAACTAGATACATCAACATGATTTATCACAA410.17957252978276103No Hit
GTTTCTGGGATGCCACAACTAGATACATCAACATGATTTATCACAA410.17957252978276103No Hit
TAAGCCGGCATGCCTAGATGTGATACACGTTTCTGGAAACTGCCTC400.17519271198318148No Hit
ACTACCGGGCGACTTATCTATGAGGACTACGTGTCCATCCTGTCCC390.17081289418360196No Hit
ACAATTGGGGAGCTTTCTGGGCCGATGTCCCACCAGGAAGGCTGCT390.17081289418360196No Hit
CCGTTTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC390.17081289418360196No Hit
CATTTGGGGTATGCCACAACTAGATACATCAACATGATTTATCACA390.17081289418360196No Hit
CCTACAGGAGAAACTCTTCCCTCATGAGGAGACAAGGAGGAAGGAA390.17081289418360196No Hit
AGTCAAGGGGGCACCAACTCAGAGTCTTGTTGGAGCTTTATCCCTT380.16643307638402244No Hit
ATTCTAGGGGAGCACACGTGACCTCCGCCGCCGCTGCTAACCTGCA360.15767344078486337No Hit
GAACCTGGGCCTGAAGACCTTCTCCCCTGACGTCTTCCGGCTTTTC360.15767344078486337No Hit
TACTTTGGGAGTTTGATGGAGAACAATTCTTATCCTCGGTTCTTGG360.15767344078486337No Hit
CAGGCTGGGCTTTAATTGCATTGAGAATAGATTCCTTTTCCTGCTC350.15329362298528382No Hit
AACCAAGGGGCCGCTCCTCCGCTGCAGAGTCGTGCCCTGAGCTCGG350.15329362298528382No Hit
CAGTTGGGGGGTTCTGCACCAACTCAGAGTCTTGTTGGAGCTTTAT350.15329362298528382No Hit
GTCAATGGGGACTTCTGATTCTGACAGACTCAGGAAGAAACCATGG340.1489138051857043No Hit
TAATCAGGGACCCCAGGAAACATCTCCCCAAGTTCCAGCGCCCTTA340.1489138051857043No Hit
CGACACGGGGATCCCGCTGGAGGAGGGGACCCAATTCTCTACCAGC340.1489138051857043No Hit
ATTATAGGGCGTGCAGAATATGTCCGGCTGGCAATAAACTACAGAC340.1489138051857043No Hit
CAGTTTCGGGATGCCACAACTAGATACATCAACATGATTTATCACA340.1489138051857043No Hit
TGCCTTGGGGCTGTGTACTGTGTGCTCTGTTTGCTCTGTGTTCTGT340.1489138051857043No Hit
TGTAAAGGGGGTTGCAGACATGGCGGCGTCCCTGGGAGGGATGTTC340.1489138051857043No Hit
CTCACAGGGATTATGGTCTGTACTATAAATGTGTTTCTAAGCACTT340.1489138051857043No Hit
ATGCTGGGTTAGGATATTGTGAGTAATATAGATTGGCGCTAGTAGA330.14453398738612475No Hit
CCACGGGGGGAAGATGTGAAATTTGTCATCAATTATGACTACCCTA330.14453398738612475No Hit
GTTTGGGGGGAGGTAATATTAAATGATCTCCAGCTATACTATGAGC330.14453398738612475No Hit
CATTCGTGGGATGCCACAACTAGATACATCAACATGATTTATCACA330.14453398738612475No Hit
TTGACAGGGGCCTGAAGTTTGATAAGGGCCCTTTTGAGAAGAACTG330.14453398738612475No Hit
CACATAGGGAACATTTTTATGTTCCCTTCACTCAGGCTTGCTTTGC330.14453398738612475No Hit
TATCAAGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA320.1401541695865452No Hit
AACCTAGGGTATGGCCTACCCATTCCAACTTGGTCTACAAGACGCC320.1401541695865452No Hit
TGTGCAGGGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAA320.1401541695865452No Hit
GGTTTTGGGGGCACCAACTCAGAGTCTTGTTGGAGCTTTATCCCTT320.1401541695865452No Hit
CTCAACGGGGATCTGAGCAGCCACAACAACCATATGGCCAAGGTGC320.1401541695865452No Hit
GCATCCGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC320.1401541695865452No Hit
CGTCAAGGGAGTGACTGCTGCAGGAAGATGGCGGAGCTGCGCGCGC320.1401541695865452No Hit
TCCGCTGGGGCCTTTCAGCGGCGCGCGGCTGCAAGATGGCGGTGCA320.1401541695865452No Hit
TTTTTTGGGGGGTGGCTGCAGCGACAGCGCTTGGCGCGCGGAGCTA320.1401541695865452No Hit
CACTGAGGGATAACCGGAAGCCTGCAGAGACCAACTTGAGGCACAT320.1401541695865452No Hit
GAATGTGGGACAGCTCTCTTCCCCAGCAGCTTCTTCTTAGGGCAAG310.13577435178696567No Hit
TGTATAGGGTATGCCACAACTAGATACATCAACATGATTTATCACA310.13577435178696567No Hit
TTGATGGGGGCCTTTCAGCGGCGCGCGGCTGCAAGATGGCGGTGCA310.13577435178696567No Hit
CTCCAAGGGGACTTCTGATTCTGACAGACTCAGGAAGAAACCATGG310.13577435178696567No Hit
TCAGTAGGGATCACCCTGGAGGTCGAGCCCAGTGACACCATTGAGA310.13577435178696567No Hit
TAATAAGGGGATAGGAAGGGTATGGTGGGTACCCTGTCCATAGGAC310.13577435178696567No Hit
TTTTCTGGGGACTTCTGATTCTGACAGACTCAGGAAGAAACCATGG310.13577435178696567No Hit
TTGACTGGGGGCAGGCGTAGAGGTCCCGCGTCCTTAGCGGGCCCAG310.13577435178696567No Hit
ACCTATGGGATGCCACAACTAGATACATCAACATGATTTATCACAA310.13577435178696567No Hit
GTTGCCGGGCCAGTATGTCACAAGAAGTGTCCACGGCCAGTAGAAT300.13139453398738613No Hit
ATGGCAGGGGTAAGTATTCCTATCTATCCATTGTTTTGGGGTCAGC300.13139453398738613No Hit
TGCTATGGGGCTAATAAGAGGTTGATGTGGAAGCTCAGATCCTGAG300.13139453398738613No Hit
TATATGGGGTATGCCACAACTAGATACATCAACATGATTTATCACA300.13139453398738613No Hit
CGACATGGGTAGGCAAGGGCTTCCGATCTATACAAGGGACTCGCTG300.13139453398738613No Hit
ACTACAGGGGGGTGTTGACATTCGCCACAACAAGGACCGAAAGGTT300.13139453398738613No Hit
ACGACTGGGGTGGCCAAGATTGGGGACTTTGGACTGGCTAGGGACA300.13139453398738613No Hit
CTCCGAGGGGACTTCTGATTCTGACAGACTCAGGAAGAAACCATGG290.1270147161878066No Hit
TAAACGCGGGGTGGTGAAAGACTCCATTAACTTCCTGGACCACATT290.1270147161878066No Hit
AATCAGGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA290.1270147161878066No Hit
AACTATGGGGACATCTTTGGAGTGAGCACCACACTTCAGGATGACC290.1270147161878066No Hit
TTTTGTGGGGGGAATTCAGATGTATATATGATGTCCTTGGACGGGG290.1270147161878066No Hit
GCCTTAGGGATTTTAGCAACATCTAGCCTATCAGTTTACTCCATTC290.1270147161878066No Hit
TCTAAGGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT290.1270147161878066No Hit
CATTCCGGGATTTTGGGAAACAAAAGCTCAATAAAATATAAGCTTC290.1270147161878066No Hit
ACAACCGGGGACTTCTGATTCTGACAGACTCAGGAAGAAACCATGG290.1270147161878066No Hit
TTAGTGGGGACACATTTGCTTCTGACATAGTTGTGTTGACTCACAA290.1270147161878066No Hit
TCAACAACGGGGGACACTTCTGATTCTGACAGACTCAGGAAGAAAC290.1270147161878066No Hit
AGCTCTGGGATGATAATGAAAGCATCAGGAAAGCTTTTGTACTTAG290.1270147161878066No Hit
GGATTTGGGCGATGAGCTCTTCTCTGGGAAGCTGTACCTCATTGGA280.12263489838822705No Hit
GCTGACGGGATCCCTTTGTCCTAGCCAACCATGGCCAGCCCGCTGC280.12263489838822705No Hit
ACTTCTGGGGTTTCACTGTGAATAGTGAATGTAAAGGAGAGAAAGG280.12263489838822705No Hit
AGGTCAGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT280.12263489838822705No Hit
ACTTTAGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA280.12263489838822705No Hit
TTCTGTGGGATCCCTTTGTCCTAGCCAACCATGGCCAGCCCGCTGC280.12263489838822705No Hit
CGACCAGGGGACACATTTGCTTCTGACATAGTTGTGTTGACTCACA280.12263489838822705No Hit
TAGCCCGGGATGCCACAACTAGATACATCAACATGATTTATCACAA280.12263489838822705No Hit
CGCCACGGGGGGATGCCATGGCTTTTAATAAGTTTAATGTTCTTCA280.12263489838822705No Hit
TCCACTGGGCTGAGCACCAGGACCAGGCTGTTATCAACCACATCAT280.12263489838822705No Hit
CTAGTGGGGGACCCAAGCCAATTTTTTGTGTTATTATTATTATTGT280.12263489838822705No Hit
CTTAACGGGGACACCATACATTCAACTTCATCTATAGAATGGCTGT280.12263489838822705No Hit
ATAAAAGGGATGCCACAACTAGATACATCAACATGATTTATCACAA280.12263489838822705No Hit
TGCTAAGGGGAGAAATGATGAAGCTCTCAGAAGAAAACCGACACCT270.1182550805886475No Hit
GCCACTGAGGGCTCCTTAGAAGAATATATTCAAGAGAACAACAATA270.1182550805886475No Hit
TACCATGGGGACTTCTGATTCTGACAGACTCAGGAAGAAACCATGG270.1182550805886475No Hit
GTAATAGGGGAGAGACACTGGTTCCTGACTCCTCTAGCTTTCATTT270.1182550805886475No Hit
TCACAGGGGGACTTCTCCGAGCAGCAGTGACCATGGCAGCGAAAAT270.1182550805886475No Hit
ACTACTGGGGAAGGCTGTGGCGACTGTGGGGCCTATTTCTGTTGCT270.1182550805886475No Hit
CTCTTGGGGACTTCTGATTCTGACAGACTCAGGAAGAAACCATGGT270.1182550805886475No Hit
TGCCATGGGGGCATTGTGGATGCCTATGGTGTGGGCCGCTACAGGG270.1182550805886475No Hit
GATGCAGGGGTTCAAATCCTCTCCCTAATAGTGTTCTTTATTAATA270.1182550805886475No Hit
CTCAATGGGGGGCCAGAGCACAGAGGAGATACGGGCGCGGCTCTCC270.1182550805886475No Hit
GACCCTGTGCTCCAAAGCCTCCCACCATCTAAGATCCTCTACCGTC270.1182550805886475No Hit
CATACTAGGGACTTCTGATTCTGACAGACTCAGGAAGAAACCATGG260.11387526278906798No Hit
ACACAGGGAGTCATTGTGAAGGGCCCCAGGGGGACTCTGCGGAGGG260.11387526278906798No Hit
TCATCGCGGGATGACCCACCAAACTCATGCATATCACATAGTTAAT260.11387526278906798No Hit
GATCAAGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACAT260.11387526278906798No Hit
CTCACCGGGATGCCACAACTAGATACATCAACATGATTTATCACAA260.11387526278906798No Hit
TGGCATGGGACATACAGCCAGGAAACAAAGCTTAGCAGGAGAGGAG260.11387526278906798No Hit
AATCCTGGGAACAGATTCATTTTATGGGCAAGATCAAAGACAGCAA260.11387526278906798No Hit
TAGCTGGGGTGTCTAGAAGAAAGAGACTGGCTACCAGGACAGCCAG260.11387526278906798No Hit
TACTCAGGGGGAGAAACCGAAGTGTAGGTGACGGTTCCGAGACATC260.11387526278906798No Hit
GAGCGAGGGTATGCCACAACTAGATACATCAACATGATTTATCACA260.11387526278906798No Hit
CACCCAGGGCTGCTGCTTATCCTGGGCAAGCTGATCCTGCTGCACC260.11387526278906798No Hit
TCTCAAGGGGGGGCTTGGTAAAGCTCAGCTCCGTGTGACCTGCATG260.11387526278906798No Hit
CGGCCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA260.11387526278906798No Hit
ATTCATGGGGACAACAGTCAGACCTCGCCAGCCAGCCGCCAGCAGC260.11387526278906798No Hit
CACCGGGGAAGAGAGACCAGCATAGCCACATAGACCCCTCTTCAGG260.11387526278906798No Hit
ACGTACGGGATGACAAACATACGAAAAACACACCCATTATTTAAAA260.11387526278906798No Hit
TCACATGGGGACTTCTGATTCTGACAGACTCAGGAAGAAACCATGG260.11387526278906798No Hit
ACTACCGGGCTTCCATGAAATCTGTCTTCCACCACAGCACCCTGGG260.11387526278906798No Hit
TTACTCGGGGACTGAAGTGTGCAGACTTTCAGGGTAAAGTACACTT260.11387526278906798No Hit
AGCATTGGGGGTGGCAGAGGTGGGGATCTCAGACTATGGCGACAAG260.11387526278906798No Hit
CAGTAAGGGGACTTCTGATTCTGACAGACTCAGGAAGAAACCATGG250.10949544498948843No Hit
TTCGCTGGGATGACAAACATACGAAAAACACACCCATTATTTAAAA250.10949544498948843No Hit
ACTGCTGGGGATGAAATTGAGAATGTGGCCAAACAGTTTGGTGCAC250.10949544498948843No Hit
CTTAGAGGGGACTTCTGATTCTGACAGACTCAGGAAGAAACCATGG250.10949544498948843No Hit
CAGATGGGGGTACTTGGCGAAAGGTTCTGTATGTTTGCAATGAATG250.10949544498948843No Hit
TAATACGGGACTTCTGATTCTGACAGACTCAGGAAGAAACCATGGT250.10949544498948843No Hit
CGTTTTGGGACATTTGCTTCTGACATAGTTGTGTTGACTCACAACC250.10949544498948843No Hit
GTGTTTGGGAGTGACGAGAGGTTTTGTCCGGTTCGGCGGTCTTTCT250.10949544498948843No Hit
AGTCATGGGTCGCACGGGGGGGTTTGTGTCAGCTTCTCTTTCCTAG250.10949544498948843No Hit
CGTCAGGGGAGATGGGGAAATGGATGTGACAAGAAAGAGGTTCATC250.10949544498948843No Hit
AACCTTGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA250.10949544498948843No Hit
TCATAAGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC250.10949544498948843No Hit
CTGCCAGGGATGCCACAACTAGATACATCAACATGATTTATCACAA250.10949544498948843No Hit
TTACATGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT250.10949544498948843No Hit
ATTACCGGGGCGTCTGTTCTGCACCAACTCAGAGTCTTGTTGGAGC240.10511562718990891No Hit
AGCAGTGGGTATGGCCTACCCATTCCAACTTGGTCTACAAGACGCC240.10511562718990891No Hit
AACATAGGGGGACACTTCTGATTCTGACAGACTCAGGAAGAAACCA240.10511562718990891No Hit
CCTAAGGGGACTTCTGATTCTGACAGACTCAGGAAGAAACCATGGT240.10511562718990891No Hit
CCGAGTGGGGCCCGGGCTCCAGTGAGAGCATAAAACAGAAGTGAAG240.10511562718990891No Hit
CTCGTAGGGGAGGGCCGTGACGCACTACGACGCGGCGGGGCTCTCA240.10511562718990891No Hit
GCACGGGGGGACTTCTGATTCTGACAGACTCAGGAAGAAACCATGG240.10511562718990891No Hit
TTCCAAGGGGCTCTCTTTCCGTTCCTAGCGCAGCCATGGCTCGTGG240.10511562718990891No Hit
TCTCCCGGGAGCACAGCACTCGGCCAGCTTCTGAAGCTTCTGGGCC240.10511562718990891No Hit
GTAATAGGGGGGACTCAGAGGGGACCAGGTATATACTGGCCTTGTT240.10511562718990891No Hit
AAGCTAGGGTATGGCCTACCCATTCCAACTTGGTCTACAAGACGCC240.10511562718990891No Hit
CATCAGGGGACTTCTGATTCTGACAGACTCAGGAAGAAACCATGGT230.10073580939032936No Hit
GTAACAGGGGACTTCTGATTCTGACAGACTCAGGAAGAAACCATGG230.10073580939032936No Hit
CGATATGGGGCTGGCCGTCCTGGCCGTGGCCTGGGCGGCGACCCCA230.10073580939032936No Hit
GAAGAAGGGGGACACTTCTGATTCTGACAGACTCAGGAAGAAACCA230.10073580939032936No Hit
CTTGTAGGGAAACCAACCACACCTAGCATTCCTACACATCTGTACC230.10073580939032936No Hit
CAGCACGGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAAG230.10073580939032936No Hit
TCTAAAGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT230.10073580939032936No Hit
TTTTATGGGATCTCTTTGCATTTCCTTCCTGCCTGCTCCTCAGTAT230.10073580939032936No Hit
TTTTGCGGGCCTGCATGCACTAACGGTGCAGAACATGGCATGGTGA230.10073580939032936No Hit
AACACTGGGGCTCCTTCTGCCCAGTTTTCCTTGCTTTGTCCACATT230.10073580939032936No Hit
ATTACTGGGACTTCTGATTCTGACAGACTCAGGAAGAAACCATGGT230.10073580939032936No Hit
TGTAATGGAAAGGTTTGGTCCTGGCCTTATAATTAATTAGAGGTAA230.10073580939032936No Hit
AGTCCAGGGGAGCGCCAGCGACTGAGCAGGCAAACTGACCAGGCTC230.10073580939032936No Hit
ATTCACGGGATGCCATCTACCTTCTTCAACCTCACCATAGCCTTCT230.10073580939032936No Hit
TTCGTCGGGGGGAGTGGGTGGGGAACTGGGAAGAGGGTGGAGAACA230.10073580939032936No Hit
TTCTTAGGGACTTCTGATTCTGACAGACTCAGGAAGAAACCATGGT230.10073580939032936No Hit
TCATCTGGGACTTCTGATTCTGACAGACTCAGGAAGAAACCATGGT230.10073580939032936No Hit
GTTCGAGGGGACATTTGCTTCTGACATAGTTGTGTTGACTCACAAC230.10073580939032936No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)