FastQCFastQC Report
Sat 31 Dec 2022
SRR5842993.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5842993.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22153
Sequences flagged as poor quality0
Sequence length46
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGGCAGGGGTAAGTATTCCTATCTATCCATTGTTTTGGGGTCAGC450.203132758542861No Hit
CTCCAAGGGGACTTCTGATTCTGACAGACTCAGGAAGAAACCATGG440.19861869724190853No Hit
TACTTTGGGAGTTTGATGGAGAACAATTCTTATCCTCGGTTCTTGG430.1941046359409561No Hit
TGCTCCGGGGAGCCCGGGCATCGCCCCTCGTTTATGAACTAGCCTA420.18959057464000362No Hit
GCCACTGAGGGCTCCTTAGAAGAATATATTCAAGAGAACAACAATA410.18507651333905115No Hit
TAAGCCGGCATGCCTAGATGTGATACACGTTTCTGGAAACTGCCTC400.18056245203809868No Hit
TTTTTTGGGGGGTGGCTGCAGCGACAGCGCTTGGCGCGCGGAGCTA400.18056245203809868No Hit
CACATAGGGAACATTTTTATGTTCCCTTCACTCAGGCTTGCTTTGC400.18056245203809868No Hit
TCACAGGGGGACTTCTCCGAGCAGCAGTGACCATGGCAGCGAAAAT390.1760483907371462No Hit
CACTGAGGGATAACCGGAAGCCTGCAGAGACCAACTTGAGGCACAT390.1760483907371462No Hit
ATGCTGGGTTAGGATATTGTGAGTAATATAGATTGGCGCTAGTAGA380.17153432943619373No Hit
ACTACCGGGCGACTTATCTATGAGGACTACGTGTCCATCCTGTCCC380.17153432943619373No Hit
ACTTCTGGGGTTTCACTGTGAATAGTGAATGTAAAGGAGAGAAAGG370.1670202681352413No Hit
CACTCTGGGATTCTGAGCCCGGGCATCGCCCCTCGTTTATGAACTA370.1670202681352413No Hit
AGTCAAGGGGGCACCAACTCAGAGTCTTGTTGGAGCTTTATCCCTT370.1670202681352413No Hit
CCTACAGGAGAAACTCTTCCCTCATGAGGAGACAAGGAGGAAGGAA370.1670202681352413No Hit
TCATCGCGGGATGACCCACCAAACTCATGCATATCACATAGTTAAT350.15799214553333635No Hit
TGCCTTGGGGCTGTGTACTGTGTGCTCTGTTTGCTCTGTGTTCTGT350.15799214553333635No Hit
TTAGTGGGGACACATTTGCTTCTGACATAGTTGTGTTGACTCACAA350.15799214553333635No Hit
ATTACCGGGGCGTCTGTTCTGCACCAACTCAGAGTCTTGTTGGAGC340.15347808423238388No Hit
GCTGACGGGATCCCTTTGTCCTAGCCAACCATGGCCAGCCCGCTGC340.15347808423238388No Hit
ACAATTGGGGAGCTTTCTGGGCCGATGTCCCACCAGGAAGGCTGCT340.15347808423238388No Hit
TAATAAGGGGATAGGAAGGGTATGGTGGGTACCCTGTCCATAGGAC340.15347808423238388No Hit
GTTTCTGGGATGCCACAACTAGATACATCAACATGATTTATCACAA340.15347808423238388No Hit
CATTTGGGGTATGCCACAACTAGATACATCAACATGATTTATCACA340.15347808423238388No Hit
ACGACAGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT340.15347808423238388No Hit
CAGCCTGGGGACTTCTGATTCTGACAGACTCAGGAAGAAACCATGG340.15347808423238388No Hit
AGTTCTGGGACATTTGCTTCTGACATAGTTGTGTTGACTCACAACC330.1489640229314314No Hit
TTGCTTGGGGACTTCTGATTCTGACAGACTCAGGAAGAAACCATGG330.1489640229314314No Hit
CCGTTTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC330.1489640229314314No Hit
CAGTTTCGGGATGCCACAACTAGATACATCAACATGATTTATCACA330.1489640229314314No Hit
CAGTTGGGGGGTTCTGCACCAACTCAGAGTCTTGTTGGAGCTTTAT330.1489640229314314No Hit
CTAGTGGGGGACCCAAGCCAATTTTTTGTGTTATTATTATTATTGT330.1489640229314314No Hit
GATCAAGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACAT320.14444996163047893No Hit
GTATTGGGGATGCCACAACTAGATACATCAACATGATTTATCACAA320.14444996163047893No Hit
ATTCTAGGGGAGCACACGTGACCTCCGCCGCCGCTGCTAACCTGCA320.14444996163047893No Hit
TTCTGTGGGATCCCTTTGTCCTAGCCAACCATGGCCAGCCCGCTGC320.14444996163047893No Hit
TTTTGTGGGGGGAATTCAGATGTATATATGATGTCCTTGGACGGGG320.14444996163047893No Hit
GCATCCGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC320.14444996163047893No Hit
GTACCTGGGTATGCCACAACTAGATACATCAACATGATTTATCACA310.13993590032952646No Hit
GATACAGGGTCAGAATGGGAATTAAGCATCAACTTCCTCTCAAAGT310.13993590032952646No Hit
TCAGAGGGGCACTTACCTGGGTGACTGGTACAGCGTCAACTGGATG310.13993590032952646No Hit
CGTCAAGGGAGTGACTGCTGCAGGAAGATGGCGGAGCTGCGCGCGC310.13993590032952646No Hit
TCCGCTGGGGCCTTTCAGCGGCGCGCGGCTGCAAGATGGCGGTGCA310.13993590032952646No Hit
AAGCTTGGGGTCATGTGTTGAATGGTTGGGTCTTGTGAAGTCTGAG310.13993590032952646No Hit
ACTACAGGGGGGTGTTGACATTCGCCACAACAAGGACCGAAAGGTT310.13993590032952646No Hit
TCCACTGGGCTGAGCACCAGGACCAGGCTGTTATCAACCACATCAT310.13993590032952646No Hit
GTTGCCGGGCCAGTATGTCACAAGAAGTGTCCACGGCCAGTAGAAT300.135421839028574No Hit
CTCAACGGGGATCTGAGCAGCCACAACAACCATATGGCCAAGGTGC300.135421839028574No Hit
CGACACGGGGATCCCGCTGGAGGAGGGGACCCAATTCTCTACCAGC300.135421839028574No Hit
CATTCGTGGGATGCCACAACTAGATACATCAACATGATTTATCACA300.135421839028574No Hit
CGACCAGGGGACACATTTGCTTCTGACATAGTTGTGTTGACTCACA300.135421839028574No Hit
GAACCTGGGCCTGAAGACCTTCTCCCCTGACGTCTTCCGGCTTTTC300.135421839028574No Hit
GTGTTTGGGAGTGACGAGAGGTTTTGTCCGGTTCGGCGGTCTTTCT300.135421839028574No Hit
CACCGGGGAAGAGAGACCAGCATAGCCACATAGACCCCTCTTCAGG300.135421839028574No Hit
AACCTTGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA300.135421839028574No Hit
TGTAAAGGGGGTTGCAGACATGGCGGCGTCCCTGGGAGGGATGTTC300.135421839028574No Hit
CGACATGGGTAGGCAAGGGCTTCCGATCTATACAAGGGACTCGCTG300.135421839028574No Hit
GTTCGAGGGGACATTTGCTTCTGACATAGTTGTGTTGACTCACAAC300.135421839028574No Hit
TCACTTGGGGACTTCTGATTCTGACAGACTCAGGAAGAAACCATGG290.13090777772762155No Hit
CGATATGGGGCTGGCCGTCCTGGCCGTGGCCTGGGCGGCGACCCCA290.13090777772762155No Hit
CCACGGGGGGAAGATGTGAAATTTGTCATCAATTATGACTACCCTA290.13090777772762155No Hit
TGGCATGGGACATACAGCCAGGAAACAAAGCTTAGCAGGAGAGGAG290.13090777772762155No Hit
ACTTTAGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA290.13090777772762155No Hit
CCATCCGGGACTTCTGATTCTGACAGACTCAGGAAGAAACCATGGT290.13090777772762155No Hit
TCTAAGGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT290.13090777772762155No Hit
TTTTCTGGGGACTTCTGATTCTGACAGACTCAGGAAGAAACCATGG290.13090777772762155No Hit
GTAATAGGGGAGAGACACTGGTTCCTGACTCCTCTAGCTTTCATTT290.13090777772762155No Hit
TGCCATGGGGGCATTGTGGATGCCTATGGTGTGGGCCGCTACAGGG290.13090777772762155No Hit
ACCTATGGGATGCCACAACTAGATACATCAACATGATTTATCACAA290.13090777772762155No Hit
TGTATGGGGGAACAACTGAATAAGATTCCTGGGTTCTGTGAGAATG290.13090777772762155No Hit
AGCATTGGGGGTGGCAGAGGTGGGGATCTCAGACTATGGCGACAAG290.13090777772762155No Hit
GGACTAGGGGTCTCAAATTGCATGAATATTTTCTGGCTGTTGGAAA280.12639371642666908No Hit
CCTAAGGGGACTTCTGATTCTGACAGACTCAGGAAGAAACCATGGT280.12639371642666908No Hit
CAGCAGGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAAGA280.12639371642666908No Hit
ATCTAGGGGATGCCACAACTAGATACATCAACATGATTTATCACAA280.12639371642666908No Hit
CTTTTTGGGGGACACTTCTGATTCTGACAGACTCAGGAAGAAACCA280.12639371642666908No Hit
TTATTGGGCCGGGAGCATGCAGCACTGGAGCCTCGCCACCTTGGGG280.12639371642666908No Hit
TTGACTGGGGGCAGGCGTAGAGGTCCCGCGTCCTTAGCGGGCCCAG280.12639371642666908No Hit
ACTACCGGGCTTCCATGAAATCTGTCTTCCACCACAGCACCCTGGG280.12639371642666908No Hit
AAGCTAGGGTATGGCCTACCCATTCCAACTTGGTCTACAAGACGCC280.12639371642666908No Hit
TAGTCCGGGGTGCCAAACGCCTGGCCAATGTAGTTCGCCAAGTACA280.12639371642666908No Hit
CATCAGGGGACTTCTGATTCTGACAGACTCAGGAAGAAACCATGGT270.12187965512571661No Hit
GCTCCAGGGATCTTTTCTTTTGGCTTAATCCGATTTGGTTTGGTTT270.12187965512571661No Hit
GAATGTGGGACAGCTCTCTTCCCCAGCAGCTTCTTCTTAGGGCAAG270.12187965512571661No Hit
CTCACCGGGATGCCACAACTAGATACATCAACATGATTTATCACAA270.12187965512571661No Hit
TGTGCAGGGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAA270.12187965512571661No Hit
TCAGTAGGGATCACCCTGGAGGTCGAGCCCAGTGACACCATTGAGA270.12187965512571661No Hit
ATTTAAGGGACTTCTGATTCTGACAGACTCAGGAAGAAACCATGGT270.12187965512571661No Hit
TCGCTTGGGGACTTCTGATTCTGACAGACTCAGGAAGAAACCATGG270.12187965512571661No Hit
ATACGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCTGC270.12187965512571661No Hit
TGCTATGGGGCTAATAAGAGGTTGATGTGGAAGCTCAGATCCTGAG270.12187965512571661No Hit
CTCTTGGGGACTTCTGATTCTGACAGACTCAGGAAGAAACCATGGT270.12187965512571661No Hit
CGCCACGGGGGGATGCCATGGCTTTTAATAAGTTTAATGTTCTTCA270.12187965512571661No Hit
ACGACTGGGGTGGCCAAGATTGGGGACTTTGGACTGGCTAGGGACA270.12187965512571661No Hit
AGCTCTGGGATGATAATGAAAGCATCAGGAAAGCTTTTGTACTTAG270.12187965512571661No Hit
CAGTAAGGGGACTTCTGATTCTGACAGACTCAGGAAGAAACCATGG260.11736559382476415No Hit
CAGGCTGGGCTTTAATTGCATTGAGAATAGATTCCTTTTCCTGCTC260.11736559382476415No Hit
CGCGTTGGGATGGTGTGGTATTGGAGGAGGATCACCATGATGTCCC260.11736559382476415No Hit
TTGACAGGGGCCTGAAGTTTGATAAGGGCCCTTTTGAGAAGAACTG260.11736559382476415No Hit
TGTAATGGAAAGGTTTGGTCCTGGCCTTATAATTAATTAGAGGTAA260.11736559382476415No Hit
ACAACCGGGGACTTCTGATTCTGACAGACTCAGGAAGAAACCATGG260.11736559382476415No Hit
GAAATTGGGGACTTCTGATTCTGACAGACTCAGGAAGAAACCATGG260.11736559382476415No Hit
ATTCGCGGGAACTCTTGTCTTCTGTGAGCTTTCCGTCCTCTGTAGT260.11736559382476415No Hit
CGTGCTGGGGACTTCTGATTCTGACAGACTCAGGAAGAAACCATGG250.11285153252381167No Hit
CTCCGAGGGGACTTCTGATTCTGACAGACTCAGGAAGAAACCATGG250.11285153252381167No Hit
AGGTCAGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT250.11285153252381167No Hit
GTTTGGGGGGAGGTAATATTAAATGATCTCCAGCTATACTATGAGC250.11285153252381167No Hit
CCTTACGGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAAG250.11285153252381167No Hit
GCTCCCGGGGCAAGAGCTACCCACTATGTCCCTACTGCTATAACCA250.11285153252381167No Hit
AACACTGGGGCTCCTTCTGCCCAGTTTTCCTTGCTTTGTCCACATT250.11285153252381167No Hit
CATTCCGGGATTTTGGGAAACAAAAGCTCAATAAAATATAAGCTTC250.11285153252381167No Hit
TACCATGGGGACTTCTGATTCTGACAGACTCAGGAAGAAACCATGG250.11285153252381167No Hit
GATTAGGGGCACTTGGTTGGACGTCACACCAGGTCCCACCAGCCCC250.11285153252381167No Hit
CGACCTGGGACGAGACGTAATTCGTGAAGGAACCTACCAAGGCCAC250.11285153252381167No Hit
TTCGTCGGGGGGAGTGGGTGGGGAACTGGGAAGAGGGTGGAGAACA250.11285153252381167No Hit
GCAAATGGGATGACAAACATACGAAAAACACACCCATTATTTAAAA250.11285153252381167No Hit
CTTCCAGGGGGTTAGGTTGGCTGGTGGGCACTGCCGGCGGGATACC250.11285153252381167No Hit
TTACATGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT250.11285153252381167No Hit
TTATTAGGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAAG240.10833747122285921No Hit
CAGTAAGGGGTCTCGGGGCGCGCCGGGCCTTGCTGAACGCCCGCAG240.10833747122285921No Hit
GTGGACGGGGCGTCTAATGCTGGTATTGGCACCTGTTATGTGCATT240.10833747122285921No Hit
CGGTAAGGGGACCTGGGAAGACTCAGGGCTTTACAACGCCCAAGTC240.10833747122285921No Hit
AACATAGGGGGACACTTCTGATTCTGACAGACTCAGGAAGAAACCA240.10833747122285921No Hit
GTTGCCGGGGTTAATGCTTTCAGACAAAGGATGAAATAGGTTGTCT240.10833747122285921No Hit
ATTATAGGGCGTGCAGAATATGTCCGGCTGGCAATAAACTACAGAC240.10833747122285921No Hit
CGTTTTGGGACATTTGCTTCTGACATAGTTGTGTTGACTCACAACC240.10833747122285921No Hit
AAGGCAGGGGACTTCTGATTCTGACAGACTCAGGAAGAAACCATGG240.10833747122285921No Hit
AGTCATGGGTCGCACGGGGGGGTTTGTGTCAGCTTCTCTTTCCTAG240.10833747122285921No Hit
TTTAGTGGGGCTGACCCAAAATGGCCGCGCCCAGAGCGTAGTTCTT240.10833747122285921No Hit
ACGTACGGGATGACAAACATACGAAAAACACACCCATTATTTAAAA240.10833747122285921No Hit
TAGTAAGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCA240.10833747122285921No Hit
GACCCTGTGCTCCAAAGCCTCCCACCATCTAAGATCCTCTACCGTC240.10833747122285921No Hit
CGATGGGGTCTCGAATTGTGGGCAAATCTGGCCTCAACATCTACAA240.10833747122285921No Hit
TATCAAGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA230.10382340992190675No Hit
CTCCTCAGGGGACTTCTGATTCTGACAGACTCAGGAAGAAACCATG230.10382340992190675No Hit
AATCAGGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA230.10382340992190675No Hit
ACGCCTGGGAGTCTTCAGGCTCCAGTATTTTGAGCCCCACTCTCCA230.10382340992190675No Hit
AACGCGGGGGCTCGTTGCCGGGCTGGTGCTCACAGTCATCGTGGTT230.10382340992190675No Hit
CAGCACGGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAAG230.10382340992190675No Hit
CAACAAGGGGACTTCTGATTCTGACAGACTCAGGAAGAAACCATGG230.10382340992190675No Hit
TAATCAGGGACCCCAGGAAACATCTCCCCAAGTTCCAGCGCCCTTA230.10382340992190675No Hit
TGTATAGGGTATGCCACAACTAGATACATCAACATGATTTATCACA230.10382340992190675No Hit
GCCTTAGGGATTTTAGCAACATCTAGCCTATCAGTTTACTCCATTC230.10382340992190675No Hit
CATCGCGGGGGGGCGGCAGAGCTCGGTGCCCGGCCTGGAGGACAGC230.10382340992190675No Hit
TACATGGGGACACTTCAGGATGACCATGAGGGCTCCTGGCCACGCT230.10382340992190675No Hit
TCTCAAGGGGGGGCTTGGTAAAGCTCAGCTCCGTGTGACCTGCATG230.10382340992190675No Hit
CGTCAGGGGAGATGGGGAAATGGATGTGACAAGAAAGAGGTTCATC230.10382340992190675No Hit
ATACAAGGGGGGTCCAAAGACTGCCTAGCCAGACTCGCGGAGCAGT230.10382340992190675No Hit
AACCAAGGGGCCGCTCCTCCGCTGCAGAGTCGTGCCCTGAGCTCGG230.10382340992190675No Hit
TATATGGGGTATGCCACAACTAGATACATCAACATGATTTATCACA230.10382340992190675No Hit
GAAGTTGGGAGGACCAGTCTGCACCGTCTCTTCGCGGTTAGCTCCT230.10382340992190675No Hit
TTACTCGGGGACTGAAGTGTGCAGACTTTCAGGGTAAAGTACACTT230.10382340992190675No Hit
ATAAAAGGGATGCCACAACTAGATACATCAACATGATTTATCACAA230.10382340992190675No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)