FastQCFastQC Report
Sat 31 Dec 2022
SRR5842988.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5842988.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51005
Sequences flagged as poor quality0
Sequence length46
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAGTGGGGGACTTCTGATTCTGACAGACTCAGGAAGAAACCATGG770.1509655916086658No Hit
GTTTCAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA720.1411626311145966No Hit
TGCTAAGGGACTTCTGATTCTGACAGACTCAGGAAGAAACCATGGT670.1313596706205274No Hit
TTGCAAGGGACTTCTGATTCTGACAGACTCAGGAAGAAACCATGGT650.1274384864228997No Hit
CTCTCTGGGCTTTTCCAGCCCCGGTACCGGACCCTGCAGCCGCAGA550.1078325654347613No Hit
CTGCCTGGGACTTCTGATCCTGACAGACTCAGGAAGAAACCATGGT520.10195078913831977No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)