FastQCFastQC Report
Sat 31 Dec 2022
SRR5842987.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5842987.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48665
Sequences flagged as poor quality0
Sequence length46
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCTCTGGGCTTTTCCAGCCCCGGTACCGGACCCTGCAGCCGCAGA610.12534675845063187No Hit
CAAGTGGGGGACTTCTGATTCTGACAGACTCAGGAAGAAACCATGG580.11918216377273193No Hit
GTTTCAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA580.11918216377273193No Hit
TGCTAAGGGACTTCTGATTCTGACAGACTCAGGAAGAAACCATGGT570.11712729888009862No Hit
TTGCAAGGGACTTCTGATTCTGACAGACTCAGGAAGAAACCATGGT520.10685297441693209No Hit
CAGGGGGATTTTGGTTCAGTTGTCACTGTCCTTGGTGTATAACAGT500.10274324463166547No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)