FastQCFastQC Report
Sat 31 Dec 2022
SRR5842985.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5842985.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38081
Sequences flagged as poor quality0
Sequence length46
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGAGCTGGAGTTTAGCAGATGTAAAGACTTCTATGAAGCAATAA630.16543683201596596No Hit
CGTACAGGGTCTTGGAGGGAGACTTCACTGAGGAGTGACCTTGAGC460.12079514718626087No Hit
TCATGGGGGGACCCCACCTTGGGGGAGATCGAGGTCATGATTGCAG440.1155431842651191No Hit
CCAGCCGGGTGTGAACAAGTGAGGTCAGATGTGGTCCCTACCCACG430.1129172028045482No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)