FastQCFastQC Report
Sat 31 Dec 2022
SRR5842984.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5842984.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15905
Sequences flagged as poor quality0
Sequence length46
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTTCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA260.1634706067274442No Hit
CAAGCGGGCGATCTGATGCCGGGGAGGGCGACAGAGCCCACTGCCG240.15089594467148695No Hit
CTATCTGGGTATGGCCTACCCATTCCAACTTGGTCTACAAGACGCC220.13832128261552973No Hit
TCTTGAGGGGTCACTGTCTAACCATGATGCCTTAACATGTGGAACG220.13832128261552973No Hit
AGACCGGGATGGTAAGATTTCTGAGAATTTTGTGGAATATGCTGAG220.13832128261552973No Hit
AAGCTAAGGGCAAGAGTTCCTGCGCATCATGAAAAAGACCAGCCTC210.1320339515875511No Hit
TTCTGTGGGAACTCTCGCATTTGGGTAAAAGTCGCACGGAAGAGCA210.1320339515875511No Hit
TCAAATGGGGTAACACTACAAAAGGCTCTCTGGACTTCTACAAGGA210.1320339515875511No Hit
CTAATGGGTGAAAGCCTGGATCAGGTCAAAGTGCCACACAGGTGCC200.12574662055957245No Hit
AAAGCCGGGAGGCAGAGCTCCCTAACCGTTCCCCAGGCTTCGGAAT200.12574662055957245No Hit
GGCTACGGGCTTCCTCCTACATGAACATCTCTCTGTGTTCTGACAT200.12574662055957245No Hit
TCGCTCGGGTTGAAGGGCTAGGATAAAATGAAAAAGAATTTAGCCT200.12574662055957245No Hit
TAATAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA200.12574662055957245No Hit
TATCATGGGGCATTTTATGGGCTGTGGCCCGCGGGACCTCAAATGA190.11945928953159383No Hit
CTCCCGGGGGAAGTGATTTCCGCTCCTTTTTCTTGCGCGGCGTTTC190.11945928953159383No Hit
CGTTAAGGGGAGACTCATTCAGAAATCAAGACTTTAGATGTAATAT190.11945928953159383No Hit
CTGCCTGGGTGGCTTTCTAGGCTTTATTGTATGAGCCCACCACATA190.11945928953159383No Hit
GTTTTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA190.11945928953159383No Hit
GCTCACGGGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCC190.11945928953159383No Hit
CCGAGGTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA190.11945928953159383No Hit
ATTCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACT180.11317195850361521No Hit
CAAGTGGGGGAACTGGATGTCTGGGAAAATCAAGGAGAGTTACCGT180.11317195850361521No Hit
ATCTTGGGACTGGTTCATTTTCTCAGAGTATGTACTGAGAATAAAC180.11317195850361521No Hit
AGGACTGGGGACTGAGCGAGCGGCTGCTACGGTCCACGCTTCTTAC180.11317195850361521No Hit
ACTGCAGGGAGGCCGAGGCCAAGATGGCGGCGCTGGCGGCTCCTGG180.11317195850361521No Hit
CATTACGGGATGGTGTTGTGAAACGAATATTCTTCTACACTAGAAA180.11317195850361521No Hit
GATACTGGGGACCGGCAAGATGGCGGCGGCGCTGACCTTCCGCCGG180.11317195850361521No Hit
CCGTCAGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC180.11317195850361521No Hit
AGCTAGGGATTGATTACAGCGGGTAGAGCGTGAAGAGGTTAGCGTT180.11317195850361521No Hit
TCACTGGGGATTTAAAAATGCCATCGATGGTGGGGATCTTACTGGG180.11317195850361521No Hit
CGGAACGGGGGGAATTCTGGACATTAATTAGGACTGAAAGCCCTAA180.11317195850361521No Hit
ATAAAAGGGAAGCTGAGAGATTGAAAAATGCAGACCACCAAGGCAC180.11317195850361521No Hit
ACATTTGGGGGAAGAAGTGGACCGCTTCCATGGCCAGAGCAGGATG180.11317195850361521No Hit
CTTCGCGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT170.1068846274756366No Hit
ACAGTAGGGGTTTTTCCTTGGATCAATCCAGCACACTGCGGGATGC170.1068846274756366No Hit
GCTCTGGGGGAGATGCGCCACGGCTTCGGTAGCGACCGGCTGTCTT170.1068846274756366No Hit
ATCCAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA170.1068846274756366No Hit
GGTTCCCAAGCATGAGCTGGGCAGAAAGGAGGGCTTACCTTCTAGA170.1068846274756366No Hit
AGAAATGGGATCGGTCTAGGCTTCAAGACGCCTAAAGAGGCTATTG170.1068846274756366No Hit
TTTGGCGGGGTTTCTCCATCCGGGTGCTGCGGCGCGGATAAGAGCC170.1068846274756366No Hit
CCGTAAGGGACATGCTTCCCCCGAGCACCAAAATGTATACCTACTT170.1068846274756366No Hit
ACATAAGGGGCTCTCGAACCAGGCTGCTTCAGCCGTGAACAACGCC170.1068846274756366No Hit
GCGCCAGGGGAGATCGTGCTTCTGGAGGCCGGCCTTGAGCCAATGG170.1068846274756366No Hit
CAACATGGGACTTCTGATTCTGACAGACTCAGGAAGAAACCATGGT170.1068846274756366No Hit
TATCATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA170.1068846274756366No Hit
GAATTAGGGGCTTTCTCTTGGGCCCGTGGCGCCGGCAAGATGGGCA170.1068846274756366No Hit
CACACAGGGAGGTCTTATAAAACAAACATTCCTTTGTTCCAGTGTT170.1068846274756366No Hit
TATTTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA160.10059729644765797No Hit
TCCACAGGGCTCTCTCTTCTCGCTGAGCGCCGCCAACATGGTGTTC160.10059729644765797No Hit
GCTTAGGGGCTGATGGGGAGTTGTATGCCTGGGAGCTGTCAGAGGG160.10059729644765797No Hit
AGACTTGGGGGTAGTGCTCCAGGGCAGCGGAACGGGGTGACCCTGA160.10059729644765797No Hit
CAGTTGGGGGAGGTGTTTTGGGGGAGTTTGTTGTAATGGTTTTGCT160.10059729644765797No Hit
TCGTCAGGGGGACAGAAAAATGGCGGCCCTGGGGTCCCCGGCGCGC160.10059729644765797No Hit
ACAAAAGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT160.10059729644765797No Hit
TCTTTGGGAGGCACTGGAAAAGATGAAAGAGTGTGCCCTTGCCCCC160.10059729644765797No Hit
TAGTAAGGGGTAATCCAGGCAGTTATGGGAGCTCTGGAGGGCCTGA160.10059729644765797No Hit
CGCAATGGGACTGTTTGTGATGGAGTAAGTGGTGCTGCTGGCTTGC160.10059729644765797No Hit
ATGACTGGGGACCAACACGCGCATTACGGACCCAGAGATTTTGGAG160.10059729644765797No Hit
TCAGCTGGGGCCGGCTGGTGGTCGTTCTATTCTCTTTGCTTCTGTC160.10059729644765797No Hit
GCTTATGGGACAATCAAAGAACTGGACCTTTATCTGGCTTACTTTG160.10059729644765797No Hit
GATTTGGGGGGCGGCTGGAGGAACCTGTGTTGTCGTATCGGTGAGG160.10059729644765797No Hit
TCTCACGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA160.10059729644765797No Hit
TCAGTAGGGTACACGGAGGTAATATTAAATGATCTCCAGCTATACT160.10059729644765797No Hit
ACGTCGGGGGGTCTTTCCGGACCTGGCCGAGCAGGAGGCGCCATCA160.10059729644765797No Hit
CTGCGCGGGCTTCATGAGGAAAAAACAACCATAGCAAAGCTTCTGG160.10059729644765797No Hit
AATACTGGGGGTCTCGGGCGAGATGGCTTCAAGGTTACTTCGCGGA160.10059729644765797No Hit
CCTTCAAGGGGGCTTTCCGCGCGACGATCGCCAAGTTCCATCTTCG160.10059729644765797No Hit
CTCTATGGGGAGCCATTACTGCCGGAAAAGGTCCAGCAGAGCTCAG160.10059729644765797No Hit
GCATGAGGGGAGCCCACCACATATTCACAGTAGGATTAGATGTAGA160.10059729644765797No Hit
ATGCTAGGGAGGCCACTTCTTCCGCGAATTGGCCGAGGAGAAGCGC160.10059729644765797No Hit
GATCCTGGGATAGGAAAAGGGGAAATCCTGGTTAAAGAATCTGTAA160.10059729644765797No Hit
CCATGCGGGGGTGATAACAGCAAGCCACTTTCTTCCCGTGATGTCC160.10059729644765797No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)