FastQCFastQC Report
Sat 31 Dec 2022
SRR5842983.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5842983.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15157
Sequences flagged as poor quality0
Sequence length46
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAGCGGGCGATCTGATGCCGGGGAGGGCGACAGAGCCCACTGCCG230.15174506828528073No Hit
CTTTCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA230.15174506828528073No Hit
TCTCGTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA220.1451474566207033No Hit
TTCATGGGGGTCGGGGTCTCCCATGGTGCAGGTGATTCTTCATCCT220.1451474566207033No Hit
ACAAAAGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT210.13854984495612588No Hit
TTATGCGGGGAAGAGGATGAAGAGGATTCATTGGAGGTTCCAGGAT210.13854984495612588No Hit
GACACGGGGTAATATCACAATGCTGGCTGGTGCTCCATGCAGCGAG210.13854984495612588No Hit
GATTTGGGGGGCGGCTGGAGGAACCTGTGTTGTCGTATCGGTGAGG200.13195223329154845No Hit
AGACCGGGATGGTAAGATTTCTGAGAATTTTGTGGAATATGCTGAG200.13195223329154845No Hit
ATATACGGGGCCAAAGAGGAAAAGGAAAGTTTGCTCACAAGATAAC190.12535462162697103No Hit
CCTGCTGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCA190.12535462162697103No Hit
GTGCTGGGGGGGACCGATTCGGCTGCTGGGGCGCAGGCATGGCATA190.12535462162697103No Hit
CGTTAAGGGGAGACTCATTCAGAAATCAAGACTTTAGATGTAATAT190.12535462162697103No Hit
TGTCCTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA190.12535462162697103No Hit
CTTGCTGGTGGTCTTCCGACTTACTGGAGTGATTTTTTCCAAATCT190.12535462162697103No Hit
ACATATGGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCT190.12535462162697103No Hit
TTACTAGGGCTATTCTGTCAGTTTTGCTTCTCGCTATTTGATTTGC190.12535462162697103No Hit
ATGCAAGGGACTGGCGGTGAACGAGTGCGCAGTGCCATGAAGGCCT190.12535462162697103No Hit
TTTGGTGGGAGGACACCAGTCATTAACGAGTGGAATGGAACTCAAA190.12535462162697103No Hit
CATCCTGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC190.12535462162697103No Hit
AGCTAAGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAG180.1187570099623936No Hit
TGCTGTGGGGGCAGTTTGTCTTCGCTGATCGGTGAGACTTCGAGCA180.1187570099623936No Hit
CAAGTGGGGGAACTGGATGTCTGGGAAAATCAAGGAGAGTTACCGT180.1187570099623936No Hit
TCGCTCGGGTTGAAGGGCTAGGATAAAATGAAAAAGAATTTAGCCT180.1187570099623936No Hit
AGCTAGGGATTGATTACAGCGGGTAGAGCGTGAAGAGGTTAGCGTT180.1187570099623936No Hit
AATACCGGGAGCAGAGCTCAGCAGCCAAGATGTGTGACTTCACCGA180.1187570099623936No Hit
TGATATGGGACCAAACACAAATACGAAAAATTATAGCCTATTCATC180.1187570099623936No Hit
ATCTAAGGGGCCTACTCCTCAGTTAGCCACATAGCACTTGTTATTG170.1121593982978162No Hit
CACTATGGGCGCGAATTGGGGACATTCAAATGAGCATCCTAGTCAC170.1121593982978162No Hit
TCTACAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC170.1121593982978162No Hit
TCTTTGGGAGGCACTGGAAAAGATGAAAGAGTGTGCCCTTGCCCCC170.1121593982978162No Hit
TCTCGCGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC170.1121593982978162No Hit
AGGCCTGGGATTGGGGTTCCTCTATCACCTCTGCTTGTTTTCTCTG170.1121593982978162No Hit
ATAACAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA170.1121593982978162No Hit
AATTGGGTAGCTGCAGCACAAGTATTGTTTTGTTCATTCTCTGTGT170.1121593982978162No Hit
TCATCAGGGAGCCTCAGCCTGGGCTTTCCCAGGATCCTGTTAGTGA170.1121593982978162No Hit
CGTCTGGGGATCCTTAAACCTCTTCCATAGGTCATCTCTCTGGAGA170.1121593982978162No Hit
TCAAATGGGGTAACACTACAAAAGGCTCTCTGGACTTCTACAAGGA170.1121593982978162No Hit
TCGTATCGGGGGGAGTAAGCAGGAAGTGAAGCTGTGGCTGCCTTGG170.1121593982978162No Hit
AACCTTGGGATCAGCTGGACCTGCCCAAGGCCAACTTCCTTTTTAA170.1121593982978162No Hit
CAAAAAGGTGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA170.1121593982978162No Hit
TATCATGGGGCATTTTATGGGCTGTGGCCCGCGGGACCTCAAATGA160.10556178663323876No Hit
TGTTTAGGGGACACCGGTCCAGTGGCCACATTTGCAGCGTGCCCTT160.10556178663323876No Hit
CCTCTGGGCAAGCGCCCCAAGTCCATCGACGACAGTGAGATGGAGA160.10556178663323876No Hit
TACTTAGGGGGAGAGGAGAGTGGAGCGGCAGCGGCGGCAGAAATGA160.10556178663323876No Hit
GCTACTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC160.10556178663323876No Hit
CTAAGTGGGGTGAAAGGAATAGAAAAAACTAAAACAAAAGTTAAAA160.10556178663323876No Hit
CTGCCGGGGACTCCGTGGGACTGTGTGTCTAGGAGTGCAGAGGGAG160.10556178663323876No Hit
TATCCTGGGATAGTTTACAGTAGAGTGTGGCTCCCGAGCCACTATC160.10556178663323876No Hit
TCTCTAGGGGGGCGCGGGGAGAGCCATGGTCTTCCGGCGGCTGCTG160.10556178663323876No Hit
AAGCTAAGGGCAAGAGTTCCTGCGCATCATGAAAAAGACCAGCCTC160.10556178663323876No Hit
CCACTCGGGGGCAGTTGCCGGAGAGAAGCTTCTACCGACAGTCGTC160.10556178663323876No Hit
ATCACAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA160.10556178663323876No Hit
GACCACGGGACCTTAGCTTTGGGTGATGATGTCTGCAGCCTTTCTT160.10556178663323876No Hit
CAAGCCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA160.10556178663323876No Hit
GGGTGGTTCGGGTGGATGCGGTCCCCATGTGAAAATATATCTTCAA160.10556178663323876No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)