FastQCFastQC Report
Sat 31 Dec 2022
SRR5842982.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5842982.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51863
Sequences flagged as poor quality0
Sequence length46
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACAATAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA960.18510305998496038No Hit
AGACAAGGTGGGCTACAACCTCAGCAGGTAGGCAGCAGGTCATCTA700.13497098123903362No Hit
CAATTTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA690.13304282436419027No Hit
TCTGCAGGGACCATGAGGGCCAAGCCCAGGTTGCTTCTATTTGCTT680.13111466748934691No Hit
ATAGTCGGGGCTAGGGACAAACGCTACTGCCACAGGAAAACAGTGG640.1234020399899736No Hit
TTTTAAGGGAGCCCAAGGCCATTGGCCATCGAAACTACCATGCAGG640.1234020399899736No Hit
AGTTCAGGGTCCTGGAAAATGCTAGCACCCATACCAGAACCCAAGC630.12147388311513024No Hit
AACTAAGGGGGTTTCTGAGAGGTCTGGGATACAAAAGATCACACAT620.11954572624028689No Hit
TCTATGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA620.11954572624028689No Hit
ACGCTCGGGATCTCACCTCTACCTTCCTCAGGAAAAACCAGTGTGA600.11568941249060023No Hit
GCTGCTGGGTGCAAACCCTTTGCGCCCGGACTCGTCCAACGACTAT600.11568941249060023No Hit
CTCTGCGGGGCTTCCCGTCTGACATTGGCGTCTTTGCTAAGGGTCA590.11376125561575691No Hit
TCACCCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA590.11376125561575691No Hit
TCTCTTGGGGGAATTCCTGGAGATTGTCTCGTACGGTTAAGAGCCT580.11183309874091356No Hit
CTGCAGGGTCTTCCTGTCTGTATCAGGGCGGCGCGTGGTCCACGCC580.11183309874091356No Hit
GCATCCGGGGCTTCCTTTCTCGCTCCCCGGCCATCTTGGCGGCTGG580.11183309874091356No Hit
ATCAACGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC580.11183309874091356No Hit
TGACAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA580.11183309874091356No Hit
CGTTATGGGGTCTCAGGGGATCTGCATATGTTTGCAGCATACTTTA580.11183309874091356No Hit
ATGCCCCCCTGCAGGCAGGCCCAAGTAGGACTGCTGGAGGCTGTGC580.11183309874091356No Hit
TTTAAGGGGGGCCCCTGGACAGCGCCGATGGGCGTGTGGGACTGGG580.11183309874091356No Hit
CTAATTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC570.10990494186607022No Hit
CTGTTGGGGGGCTTGTCTCGGGCGAGATGGCTTCAAGGTTACTTCG570.10990494186607022No Hit
TATTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACT570.10990494186607022No Hit
TAGCATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA570.10990494186607022No Hit
GTATTGGGGGCTCTTTCTTGACTCCATCTTCGCGGTAGCAGCAGCG560.1079767849912269No Hit
CTATAAGGGGGTTCCTGTATAGTTACTGTATAGTCACTATCATTCA560.1079767849912269No Hit
TTTGTAGGGGGTTTTCCGTGAGAGACGTAGAGCTGAGCGACCCAGC560.1079767849912269No Hit
TCTCATGGGGGGACGCAGGCAGAGACAGGCCCACTTTCTGCTCCTC560.1079767849912269No Hit
CTTCTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA560.1079767849912269No Hit
AGAAATGGGGGGTCCGCAGAGACCCGGAGTCCGAATTCAGAGGCCC550.10604862811638355No Hit
CAAAAGGGGGGCTCCTTCTGCCCAGTTTTCCTTGCTTTGTCCACAT550.10604862811638355No Hit
TTTTTTGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC550.10604862811638355No Hit
GTGCTAGGGGGGGTGTGGGCCGGCTGAAGGCGAATTCCAGGCCTGG550.10604862811638355No Hit
CGATTAGGGGGAGCCCAGTTGGGTCTGAGGTGCAGGCGCGAGGGGA540.10412047124154021No Hit
TTAGCCGGGTGGTGCTGGCCCTGGAGGGAGGCCATGACTTGACCGC540.10412047124154021No Hit
GATATAGGGGAGGGAGGTGCGGCTGCCATGGCGCGGAATGTGTTGT540.10412047124154021No Hit
CGCTGGGGGGGGCTGCTGCATCCACAGCCAACCTCCTGGATGACGT540.10412047124154021No Hit
CAAACTGGGGGATATTGAGGCTGCTTCGTGTCGGCACGAAGTGTCT540.10412047124154021No Hit
TGTGCTGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCT540.10412047124154021No Hit
GATTTAGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCA540.10412047124154021No Hit
CACTACGGGAGGGGCAGCGGGTGACGGTACGATGGCTGCGCAGCGG530.10219231436669689No Hit
AGTACTGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC530.10219231436669689No Hit
GTTGCTGGGGGTACTTAGCAATTTAGTTTTTAAAACACTATTCCGA530.10219231436669689No Hit
GATCATGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC530.10219231436669689No Hit
ATAACTGGGGAAGCACAAACTGGTGGCCTGGGACCATGGCCAGCTG530.10219231436669689No Hit
CCACAAGGGGGGGATCTGCATATGTTTGCAGCATACTTTAGGTGGG520.10026415749185354No Hit
CTACGGGGGATCTTTCTGAGGGAGCTCATCTCCAATTCATCGGACG520.10026415749185354No Hit
GCTCGAGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT520.10026415749185354No Hit
CAAACCGGGGAAGCGTGGGACCTTCATTGAGTTCCGGAATGGCATG520.10026415749185354No Hit
ATTATGGGGTGTACTGGAGAGCATCTGGTGGGCCAGTGTATGAAGC520.10026415749185354No Hit
ACTATAGGGAAAGTAGGGGCAGCGGGTGACGGTACGATGGCTGCGC520.10026415749185354No Hit
TACATCCGGGAAACTGGTGAATGACTAAGTCCCTGCAGGCAAACCA520.10026415749185354No Hit
TATAGCGGGACAGCGGTTCTATCCACTGCAGTGCAGACATGGCGGC520.10026415749185354No Hit
CAACCTGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT520.10026415749185354No Hit
GCAACAGGGGCCCTGCTGAAAGCCATTTTGTTTTTCAGGACGCTTT520.10026415749185354No Hit
CGAACAGGGGCTCCTTCTGCCCAGTTTTCCTTGCTTTGTCCACATT520.10026415749185354No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)