FastQCFastQC Report
Sat 31 Dec 2022
SRR5842981.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5842981.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49913
Sequences flagged as poor quality0
Sequence length46
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACAATAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA870.17430328772063391No Hit
TTTTAAGGGAGCCCAAGGCCATTGGCCATCGAAACTACCATGCAGG680.13623705247130005No Hit
TCTCATGGGGGGACGCAGGCAGAGACAGGCCCACTTTCTGCTCCTC640.1282231082082824No Hit
TCTCATGGGGACTTTGGACGTCCGCTCAGCCAGGTTGCAGAAGCGG610.12221265001101918No Hit
CTGACTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA610.12221265001101918No Hit
CTAACCGGGCTCTTCCTGTCTGTATCAGGGCGGCGCGTGGTCCACG610.12221265001101918No Hit
TAACTAGGGAGTCGGCTATGATTTGCAATGCTTGCAGTATGTATCC610.12221265001101918No Hit
TACTGTGGGGACAGACCATCTGGCATGAGGGACGGCTGAGGGATGG600.12020916394526476No Hit
ATATTAGGGGGGCATCGTCGCTCTTCGTTGTTCGTCGACTTCTAGT600.12020916394526476No Hit
CAAACTGGGGGATATTGAGGCTGCTTCGTGTCGGCACGAAGTGTCT600.12020916394526476No Hit
TCTGCAGGGACCATGAGGGCCAAGCCCAGGTTGCTTCTATTTGCTT590.11820567787951033No Hit
TATTTGGGGCCTTTTCCGAGTAACCGCCAAGATGGCCGAAGTGGAG590.11820567787951033No Hit
TATTGGGGGAGCCATGGTGAGGGTCTCTGGCACTTGAGAGCCTATA590.11820567787951033No Hit
TAGCATGGGAGATTTAAAAGCTGGTTATAGGATTTTAAGTGAAAGC590.11820567787951033No Hit
GGACTCGGGGAAGCGGAAGTGCTGGCCGGTGGATCACACTGTGGTC590.11820567787951033No Hit
ACCACCCGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA580.11620219181375593No Hit
GTTAATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA580.11620219181375593No Hit
CGCCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC580.11620219181375593No Hit
TCTATGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA580.11620219181375593No Hit
TCCCCCGCTGCCCTGATGCCTCCTGAGCCCCAGTCCTCAGAGCCCT570.11419870574800152No Hit
CAGCTGGGGATTTCAAGGTATTTGATGGTCACAAAGTTCTGTGACT570.11419870574800152No Hit
AGACAAGGTGGGCTACAACCTCAGCAGGTAGGCAGCAGGTCATCTA570.11419870574800152No Hit
TTTGTAGGGGGTTTTCCGTGAGAGACGTAGAGCTGAGCGACCCAGC560.11219521968224712No Hit
CTGTTGGGGGGCTTGTCTCGGGCGAGATGGCTTCAAGGTTACTTCG560.11219521968224712No Hit
GGTTAAGGGGAGGCAGACTTCAGCTCCTGGACACCCTTAGAGTTCC550.1101917336164927No Hit
ATTCCTGGGATTTTGAGGACTCATGGTAGGGCCAAGTGCTAGAACC550.1101917336164927No Hit
ACCTAAGGGCTCTTTCTTGACTCCATCTTCGCGGTAGCAGCAGCGG550.1101917336164927No Hit
TAGCCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA550.1101917336164927No Hit
GCCACTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA540.10818824755073828No Hit
GCATCCGGGGCTTCCTTTCTCGCTCCCCGGCCATCTTGGCGGCTGG540.10818824755073828No Hit
CTAATTGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT540.10818824755073828No Hit
GTGCACGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA530.10618476148498386No Hit
TCAGACGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA530.10618476148498386No Hit
TTTTAGGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTC530.10618476148498386No Hit
TCGTGCGGGGACAGCGGGCCTGCATCCTCTTCCGCCCCGGCCCGGA520.10418127541922946No Hit
ACGCTCGGGATCTCACCTCTACCTTCCTCAGGAAAAACCAGTGTGA520.10418127541922946No Hit
ATTATGGGGTGTACTGGAGAGCATCTGGTGGGCCAGTGTATGAAGC520.10418127541922946No Hit
TTTTTTGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC520.10418127541922946No Hit
AGGCAGAGCTGGCCCCAGAAAGGAGGACATTTCCAGACTTCTCTCC520.10418127541922946No Hit
TAACAGGGGGCGCCGGTGTAGTTCCATGATGGCGTCGGCGGTGCTG520.10418127541922946No Hit
TCCCTCGGGGACGTGGGTGGGGGAGCTGAGCGCTCAGACCCAGGGC520.10418127541922946No Hit
TGTTCTGGGGATCACACACTAATAATTGTTTTCCTAATTAGCTCCT510.10217778935347505No Hit
AAGTACGGGGAGCTCTCTTGAGTCACCCCCGCGCAGCCTAGGCTTG510.10217778935347505No Hit
TATTTGGGGCCGGTGGAGGAGTCTGGAGACGACGATCAGAAATGGC510.10217778935347505No Hit
ATTCCTGGGGGGAATTCAGATGCCTGGATAGGTTCAAGTTACGTTT510.10217778935347505No Hit
ATAGTCGGGGCTAGGGACAAACGCTACTGCCACAGGAAAACAGTGG510.10217778935347505No Hit
GCTGCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA510.10217778935347505No Hit
TTCTGCCGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCT510.10217778935347505No Hit
AACTAAGGGGGTTTCTGAGAGGTCTGGGATACAAAAGATCACACAT510.10217778935347505No Hit
ATGCCTGGGACCTGCTTCCTGCTGGCACTGAGGATTATATCCATAT510.10217778935347505No Hit
TATTGAGGGGACCCCACAGGATGCTGAAAAGGACCCAGCTAAGCCA510.10217778935347505No Hit
TTATAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA510.10217778935347505No Hit
TTCCAGGGGGTCTTTCCGGACCTGGCCGAGCAGGAGGCGCCATCAT510.10217778935347505No Hit
CTACGGGGGATCTTTCTGAGGGAGCTCATCTCCAATTCATCGGACG500.10017430328772065No Hit
TCTTCTGGGGATCTGCTTTAGGGGCTGGTGGCCAAGCTAGTCCTAG500.10017430328772065No Hit
CGCTGGGGGGGGCTGCTGCATCCACAGCCAACCTCCTGGATGACGT500.10017430328772065No Hit
GCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCACGCCCGGTT500.10017430328772065No Hit
TCAACTGGGGGGACAACATTTGGAGCTTCTAAATTAGCCCCGACCC500.10017430328772065No Hit
GCCGGTCTTCAACTGGGTGCTGGCCTGAGTGTGGGGCTGAGTGGCC500.10017430328772065No Hit
TACATCCGGGAAACTGGTGAATGACTAAGTCCCTGCAGGCAAACCA500.10017430328772065No Hit
TAACATGGGGCCTCTTCCGGGTTGCGGTAGAACATGGCGCAGGGAC500.10017430328772065No Hit
TTTAAGGGGGGCCCCTGGACAGCGCCGATGGGCGTGTGGGACTGGG500.10017430328772065No Hit
CCTACAGGGGCGGTGACGTGCTGCGGTGGCAGCGGGTGGACGGCGA500.10017430328772065No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)