FastQCFastQC Report
Sat 31 Dec 2022
SRR5842978.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5842978.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57621
Sequences flagged as poor quality0
Sequence length46
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAACACGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA1060.1839607087693723No Hit
AGGCTTGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCA940.16313496815397163No Hit
CATCTAGGGCGATCTGTCTGCGGGTCACTCGCCTGTGGAAGGCGAT900.15619305461550476No Hit
CATTTGGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA820.142309227538571No Hit
TTCACCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA810.1405737491539543No Hit
AAGTCAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA810.1405737491539543No Hit
TAAACAGGGGTTCCGGGAGAAGGTCAATGAACAGCACCGGCAGATG790.13710279238472084No Hit
GACACTGGGGACACATTTGATATTAAGAGTTTAGAGACATGACAAG770.1336318356154874No Hit
TCTCTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA770.1336318356154874No Hit
CTTGATGGGGAAGGCTGTGTCTGGTACCCGCTACCATGCCCAAGCG770.1336318356154874No Hit
GAAATAGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC760.1318963572308707No Hit
GCTGCAGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT750.13016087884625396No Hit
GTCATAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA750.13016087884625396No Hit
TAGTTAGGGGACTGAGACACTGTGGTTTAATCTGGACCGACCCTGT750.13016087884625396No Hit
TGGGCAGGGGGAGCCACCTTGAACCCTGATCCTGACTGCAGCCGCA730.1266899220770205No Hit
TACTCCGGGGGTTACAGTGCATTGGGTTTTCTACATTCTCAGTTTG730.1266899220770205No Hit
GCAACTGGGGATTGGAAGTCATTCCTCGGTTGCACTAGCCACACAA720.12495444369240381No Hit
CTCCATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA720.12495444369240381No Hit
ATACTAGGGCAATAACCTTGAGTTAAAACTTGTCATGTTCCACCTG710.12321896530778709No Hit
CGTATCGGGAAGTCTGTGTGGTTGTTATTTGAATAAAGTTGTGTAA710.12321896530778709No Hit
TATTCAGGGGGTCACTGTGAGAAAATTAAGAAGGCTTGTGGAAATT710.12321896530778709No Hit
TTAATGAGGGGAACCAAGGACCTATCACTGACTCCAGAGCTGCAGC700.12148348692317038No Hit
TTATCGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA690.11974800853855365No Hit
TACAGGGAGTGCCAAACAGGTCAGATTTAATGACAGTTACCGAATC690.11974800853855365No Hit
AAAAAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA680.11801253015393694No Hit
TCGTCTGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC680.11801253015393694No Hit
CTAATGGGATGTTCTCTGAGCCTTAAGAGTCTGGGCTGTGTCGTGA680.11801253015393694No Hit
GGCTCTGGGGTTTCAAATGGTTCAGTATACATGAATATAGAAATAT680.11801253015393694No Hit
ATAACTGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC680.11801253015393694No Hit
CTACAGGGATTTCAGAGTCAGAGCTGTAACAGGTAAACCAAACTGT670.11627705176932021No Hit
TAACTTGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC670.11627705176932021No Hit
TAAAGCGGAGTCCAGATATGGATGACATAGCCCATGGCGCTCATCA670.11627705176932021No Hit
GCTCTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA670.11627705176932021No Hit
AGAACTGGGGTTCCCAGATGGTTTATTTTATTTTTCTACATTTTAT670.11627705176932021No Hit
TCATAAGGGATCTAATGAATTTTAGAAGGAGAAGAAATTTCTTCTT660.11454157338470349No Hit
CAGCTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA660.11454157338470349No Hit
GATATAGGGGATGCTATGGTATGCTTATAGACAGGAGCCTAGCATG660.11454157338470349No Hit
ACAAGGGGCCACTTCTCTGCTTTGGTTGCCATGGAGAACGATGGCT660.11454157338470349No Hit
CTCATGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA660.11454157338470349No Hit
AGTAGAGGGAAGTCTTCTAGTGTTTCTCAAGAAGACTGCCAGGCAT650.11280609500008676No Hit
GAGAATGGGGTGTGTGTAATTGTATGCATATCTGTATGCACAGAAA650.11280609500008676No Hit
AACCAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA640.11107061661547006No Hit
GATACTGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC640.11107061661547006No Hit
GACAGGGGGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAG640.11107061661547006No Hit
TTATATGGGGCTGATGCTGCCTGCCCAAGGACTAACATATACCCCA640.11107061661547006No Hit
ATTAAAGGGATTGCCAGAATTATTAACTGCGCAGTTAGGGCAGCGT640.11107061661547006No Hit
CCGTAGGGAGACCAAGATCAGCTGCTTCCACCTCAGCAACAAACCT630.10933513823085333No Hit
AATTCCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA630.10933513823085333No Hit
TTTATGGGGGTTAATAAATGAATATTTAGCTAATGACCCCTATTCT630.10933513823085333No Hit
CTCTATGGGGATCCCCTCCAAGGAGTGACAGTGACTTCATCTGGGA630.10933513823085333No Hit
GCCTCTGGGATGGAGTATATAGTATATATGAAAATGAGGAACTTAC630.10933513823085333No Hit
CCGCTAGGGGTCAATAGAGACGTCAAATTGGGCCCATTAATTACAA630.10933513823085333No Hit
CCCCTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA630.10933513823085333No Hit
ATATCCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA630.10933513823085333No Hit
TATACAAGGGTTTTATCGCGTTTGAATAATTTTCAAATGAATAGGC630.10933513823085333No Hit
AAAGCCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA620.10759965984623661No Hit
AGCAGAGGGACTGGGGCTGGAGGCAGGAAGGGCCAGGGGATTTCAG620.10759965984623661No Hit
TGTTAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA620.10759965984623661No Hit
GCTTAAGGGGCTTCCAAAAAACGGGTGGGAATGATTTTTGAGTGAC620.10759965984623661No Hit
GTAAGTGGGATTCTTTAGTTTGGAAGTTGGTCACTTCCTCATTTGG620.10759965984623661No Hit
ACTTTAGGGAAGCCAATGATTTGGCAAGCCTTCTGTTAGTATTGGA620.10759965984623661No Hit
TCGCCTGGGGGGAACAGGAAGTGGACCACCTTAAAGCCCACCCCCA620.10759965984623661No Hit
CTCGATGGGGATCTATGTAAGGGGGTGCCTGGGGCTGAACGCGGCG610.10586418146161988No Hit
ACGCAAGGGGTCTGTCGGGGTGGGCAGTACAGGATTCCTCCCTCCT610.10586418146161988No Hit
AATGAGGGGGACGTAATTCGTGAAGGAACCTACCAAGGCCACCACA610.10586418146161988No Hit
GGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAATG610.10586418146161988No Hit
CGACTTGGGATTAAAGAGGCTGAAGAAATGTGTTCCAAGTTTACGA610.10586418146161988No Hit
TCCAATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA610.10586418146161988No Hit
CTCACGGGACTACTGAGCTCAGCGGCAAAGGAAGAACGAGGGGCAG610.10586418146161988No Hit
ATCCTTGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT610.10586418146161988No Hit
AGTATAGGGATACAACCGAAGGTCCTTCAGAGACCAGCTCCCCCTG610.10586418146161988No Hit
ATTACAGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT610.10586418146161988No Hit
ATCAAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA610.10586418146161988No Hit
ATAACCGGGGGGAATTCCTCTGTGTCATGATCGTGAGTTGTCGCAG600.10412870307700318No Hit
GCGCATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA600.10412870307700318No Hit
GCTCCTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA600.10412870307700318No Hit
AGCAAGGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA600.10412870307700318No Hit
GTATCCGGGGGGAATTCCTGGAGATTGTCTCGTACGGTTAAGAGCC600.10412870307700318No Hit
TCCACCGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC600.10412870307700318No Hit
GCGCACGGGGTTCTGGGACGACGGGGAGAGCCTCGCGGTTCTGGAG600.10412870307700318No Hit
TTAACTGGGGTTCTATTAATAAATGGATCCTACTCTCTACAAACAC600.10412870307700318No Hit
TCCATTGGGGTGTTGGGACTTGCTGGAGGATGGGGATCCTCGTCCT590.10239322469238646No Hit
GCAGTTGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAG590.10239322469238646No Hit
TGTCACGGAAGCACAGGGCTGTCCAGTGAGGATTTATCCTGCTGCT590.10239322469238646No Hit
TCTCAGGGGGCCTTTTGTGACTGGCGGTGAACGAGTGCGCAGTGCC590.10239322469238646No Hit
TTTTTTGGGAAGTACTTATTGTGTTAACAGGAAGAACAAGAGGGAA590.10239322469238646No Hit
GGGTACGGGAAGTTTGAAGCTCTGGCTGCTCATGATGCTCTGGTTG590.10239322469238646No Hit
CAAGCCGGGGTATAGCATCAGTTTGGTATTTAAAGCATAGCTTCAA590.10239322469238646No Hit
ATGTCCGGGGGGCTGGAGAGATGGCTCAGCCGTTAAAGGCTAGGCT590.10239322469238646No Hit
TGTCTAGGGACTTACTAGAGATGAAAAGTTTAATCTTACCTCCAGA590.10239322469238646No Hit
CGTACAGGGATTCTTGTGTAGATTGTGCTGGGGCAGTGCCTCTTGT590.10239322469238646No Hit
CTTGCTGGGATCCGACTTGAGAAAACCACCCTGTTTGTGACAACTG590.10239322469238646No Hit
TTAACAGGGGTCTTGCAAAGGCTCATGTGAGCTGAGCATCTTGGTG590.10239322469238646No Hit
TCGTACGGGAATCCTACTACGGAGCCCACATTAGCCTCTTTTTTTT580.10065774630776973No Hit
ACGTGGGAAGACAAGTAGGTGTTCACTTAACTTCTGTCTATGCCTA580.10065774630776973No Hit
GGTCATGGGGTCATTGGAAATACACCTTAGAAACCTTTCTTTACAG580.10065774630776973No Hit
ATTTTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA580.10065774630776973No Hit
GATCAAGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC580.10065774630776973No Hit
GTTCGGGGTCCTGTGGGCCTCCACCACAGCTACCCCTGGCTCAAAT580.10065774630776973No Hit
CTTCTAGGGGTGCTGCGGACCAAACACCTGACTTATTTCTATCCTT580.10065774630776973No Hit
TAAACTGGGCGCTGAGGACCACCTGAAACGGGCATCGTCGCTCTTC580.10065774630776973No Hit
TTATTAGGGCGATCTTCAAGTGGGATGGCTCAGATGGCATCCACCG580.10065774630776973No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)