FastQCFastQC Report
Sat 31 Dec 2022
SRR5842974.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5842974.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62344
Sequences flagged as poor quality0
Sequence length46
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCTGCAGGATATAAAGAAACCAGACCGTGATGACTGGGAGAGCGG810.12992429103041192No Hit
AATTATGGGAGCTTCTCTATGATTAGCTTGGATTATCCATCACAGT800.12832028743744386No Hit
ACATGTGGGATAGTGCTGCAATATTAAAGATTGGATGTGCTTCCAA690.11067624791479534No Hit
CGCAACGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA670.10746824072885924No Hit
CTACATGGGGTCAAAGGACTTGATGACAGGCACTCATTCTTGCTGA660.10586423713589117No Hit
CTCGCTGGGATCTGCCACAGGGGTGTTACCAACTATTAGTCTGCTG660.10586423713589117No Hit
ATTCAAGGGGGGCTATGATGGAAGCAGGGTAAGCTGGACCTATGTG650.10426023354292313No Hit
GTAAGTGGGGTGATGGAAAATGGAGGACAGTTCTCATTCACTAGAT650.10426023354292313No Hit
TAACCAGGGCGATCTATGCACGGGATCTTTTGACACTAAGATGGAA630.10105222635698703No Hit
GCTGCTGTTTGAAACTGCTCTGCTCTCCTCTGGTTTCTCACTTGAG630.10105222635698703No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)