FastQCFastQC Report
Sat 31 Dec 2022
SRR5842973.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5842973.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59056
Sequences flagged as poor quality0
Sequence length46
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AATTATGGGAGCTTCTCTATGATTAGCTTGGATTATCCATCACAGT790.13377133568138716No Hit
TCCTGCAGGATATAAAGAAACCAGACCGTGATGACTGGGAGAGCGG750.12699810349498783No Hit
AAACCTGGGATTTTGAATCCTCTGTAAGCATGTCCATCAATCTTAA700.11853156326198863No Hit
GCTTTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA670.11345163912218911No Hit
CTCGCTGGGATCTGCCACAGGGGTGTTACCAACTATTAGTCTGCTG660.11175833107558927No Hit
TCCAATGGGGGACACTACCCTGTCATCCGGGCCACCTTGCGAAGAA620.10498509888918993No Hit
CAAGTCGGGTTGCCCCTGAAATTTGCACTATGTCTCTGGAGGGGAA620.10498509888918993No Hit
CTATCAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA610.10329179084259009No Hit
CGCAACGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA610.10329179084259009No Hit
TGTGCAGGGCTAGCACAGTTAAGAGAACTTCAGCTAATTCTTATTT610.10329179084259009No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)