FastQCFastQC Report
Sat 31 Dec 2022
SRR5842972.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5842972.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences63428
Sequences flagged as poor quality0
Sequence length46
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AATCCAGGGATGCACCATTCCTTACACACACTAAAATGCACACAAA800.12612726240776945No Hit
TCTACAGGGGGCCGCGGTGGCTGGCGCTACTTCGGAGGAGCCCGAC710.11193794538689537No Hit
CAGCTAGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT680.10720817304660402No Hit
AACGCTGGGATGGATGGTCTGGCAACATGGAGAGGATCATGAAGGC670.1056315822665069No Hit
TAGTTTGGGGTTCAGAAGGACAAGGAGCCACTTGCTGAGATGAGAG670.1056315822665069No Hit
CGTCTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA650.10247840070631267No Hit
TTTGGCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA640.10090180992621556No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)