FastQCFastQC Report
Sat 31 Dec 2022
SRR5842971.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5842971.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences60230
Sequences flagged as poor quality0
Sequence length46
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AATCCAGGGATGCACCATTCCTTACACACACTAAAATGCACACAAA800.13282417399966795No Hit
AACGCAGGGTCTGAGAAACCGAAACTGCCGCAGAAAGGGCAGACCC660.10957994354972606No Hit
TTCTGCGGGCAGCGTGTCTCATGGGAATCTCGCCATTTCCAGCCTG630.1045990370247385No Hit
CGCTAAGGGCCTTTTGTGACTGGCGGTGAACGAGTGCGCAGTGCCA630.1045990370247385No Hit
TCATGAGGGGGGGCATCACAGGTGTTTGGGAAGCGCTCTGCCCGGC620.10293873484974266No Hit
TCAAATGGGACCACATTTTAGTTTTGAGCACTGAGCCTATGGGACA610.10127843267474682No Hit
AACCATGGGACTGTAATGATGCACCTTGAGAGACCAGTTTGATTCT610.10127843267474682No Hit
ACAAAAGGGGACTCATTCCGGGGGGAATTCCAATGATAGGCTAGTC610.10127843267474682No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)