FastQCFastQC Report
Sat 31 Dec 2022
SRR5842958.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5842958.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35415
Sequences flagged as poor quality0
Sequence length46
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAAGAAGGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACA520.1468304390794861No Hit
CTTTTAGGGGAAGAGTGTGGGGAGTCTGGGCTCGGTAGTAACTCTG490.13835945220951573No Hit
TATGGAGGGGAATACACTCTTGCCTTAAGTAGGCTTAACCTATTAT490.13835945220951573No Hit
GGTGCTGGGGTTTTTGCATGATTTGTACTCATACCAGGGTCACAGC470.1327121276295355No Hit
TCAGTCGGGGATCAGCACAATGGAAGTCTCACAGACCCCTCTTCAG460.1298884653395454No Hit
CGCTATGGGATGCAGAAAGACTGGGTGCCCCGAGCTCTGCTCCTGT450.12706480304955528No Hit
GCAACTGGGGGGAATTCGGGGAATTGGATTTGCAGAGCATATTAGC450.12706480304955528No Hit
TCTCAAGGGGTGGCCCAGGCTAGCATCAGAAGTCACCGGGGACACC440.12424114075956516No Hit
TACAGACGGGGGGTGCGGGCAGTCGCAGCCGGCGGTAAAGCCTTGT430.12141747846957504No Hit
TATTCAGGGAGGCGGGCGCTGGGGTGAGAGCGCCGAGGGCCTCAGC420.11859381617958492No Hit
CCCAGCGGGTCATGGGGCATTCTCTTTTCCCACCCACGGGACTTTA420.11859381617958492No Hit
CCTGCCATAGTCCTTTTGAAAATAGTAGGTGCACTTTTAAAAAAAC410.1157701538895948No Hit
CTATCAGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA410.1157701538895948No Hit
AAATTAGGGAATTCCCTGAACCCATCAAACTGGACAAGAATGACCG410.1157701538895948No Hit
CTTTTAGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC410.1157701538895948No Hit
AGACCGGGGGGCCAGTGCGAGTCGGGCATCAGGGATCGCACCTCTC410.1157701538895948No Hit
ACTGACGGGGGGGGCTAATGCTGGAGAGTCCCTTGCGGGGTTGGGG410.1157701538895948No Hit
CACCACGGGGTTCCGCTGTAGAGGTGACCTGACTGCTGGAGACTGC410.1157701538895948No Hit
AGGTAGGGGGGGCAGCTATGAAGGCACCCTGCTTTGTATTCTTAAA400.1129464915996047No Hit
TAGACCCGGGGACTCTGGCCAGGGAAGGCATGAGTGACAGAGCTGC400.1129464915996047No Hit
GGCTACGGGACTCTTTCAAATGTCTATGTCATTATCTGTCATGCTG390.11012282930961458No Hit
AGACCACTAGCTGACCCCATTCCCTGTAGCCGTAGAGTGTGTACTG390.11012282930961458No Hit
CTCTCAGGGCACACCGGGATGCCACAACTAGATACATCAACATGAT390.11012282930961458No Hit
GATTTAGGGGAGTGCTCGGGGCGGAAGCCCCAACCTTCTTCCCTGG390.11012282930961458No Hit
CACTTCGGGGACATCAGGACTCACAGCCTACGGTGGCCAGACAGTT390.11012282930961458No Hit
CAAAGGGCAGGAAGGACCATGGGAATGGTTTTGAGGACCTGGATGA390.11012282930961458No Hit
CTCGTTGGGGATCGCTTTAAGTCTTCAGCTAGGGCTGTGGTGTTTG390.11012282930961458No Hit
TACATGGGGGAAGCACTAAAGGCTCAGGGGGAAACAATGGGGCTTT380.10729916701962446No Hit
GTCTGGGGCCCTAGCTACTGGTGTCAGAACATGGAGACTGCCGCCC380.10729916701962446No Hit
CCTCTTGGGGGCTGCACTACCGTTGCCCACAAGCCAACATGCTGCC380.10729916701962446No Hit
CATAATGGGCTAACACGGGGGGGCTGGTGCTGGTCTGGAGGCCCAG380.10729916701962446No Hit
CCTGCTGATTTTGCCAAATGGCGCTGTGTACTAAAAATCAGTGATC380.10729916701962446No Hit
CGACTGGGGGTGTCGGGCCTGAGCCGAGCAGCTGCGCGACGTCATG380.10729916701962446No Hit
TCACGAGGGGGGGTGAAGGCGGTTGTGGTCAGTGTAGGCTCCCACT370.10447550472963434No Hit
TCCTCTGGAGCGCAAGTTCCGCCAGAAGCAGTACCTGTCTATTGCC370.10447550472963434No Hit
CTATTTGGGATGACAAACATACGAAAAACACACCCATTATTTAAAA370.10447550472963434No Hit
TGTCGAAGGGCCTGTGAGAGAACAACAGAGTACTAGAAGCACACGA370.10447550472963434No Hit
CCAATCGGGGAGACCCCACGGCGTCACCATGTTGGGCATGATCAGG370.10447550472963434No Hit
TCTTGGGGGAGTCCACTTCTGGCTGAGAAAGAGGCAATCCCTGGTC370.10447550472963434No Hit
GTTGAAGGGTGAGCAACCTGTGTAGTTTCAAGTTGGATTTCCTTGT370.10447550472963434No Hit
CATAAAGGGGAAACAGAGGGGAGGAGGCCGGCGGCCAGCAGCATCG370.10447550472963434No Hit
GGTACTGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACAT360.10165184243964422No Hit
CAGCTGGGGTCTGAAAAAGCCAATAGAAATTGCTGCGTTGGGATTT360.10165184243964422No Hit
CCAGCGCCCTGACACTTGGCTAGCCAGCCGTGTGCCCTGCCCCACT360.10165184243964422No Hit
TCATGGGACAGAAGGTCCAGCTATCTCAACCCCACACTCTTGGGAA360.10165184243964422No Hit
GTGCCCGGGGAGCAAGGTGGAGCTCACCTGTGGAAAGATCAACCGA360.10165184243964422No Hit
CAGCTGGGGCAGTAGTGGGGGGCCTTGGTGGCTACATGCTGGGGAG360.10165184243964422No Hit
CAGGCTGGCCCCACTTGCTCTGCTCTCCACTTCTTTATCTTTGTTC360.10165184243964422No Hit
AGAAGGGAGAGGAAAAGTGAGCTGTGCTGTGGCTCCCGCGGCTGAC360.10165184243964422No Hit
TCCAAAGGGATGCCAAACTGCTCTGGAGTCGCCGGAGGCATCAGCA360.10165184243964422No Hit
GTCATAGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAGG360.10165184243964422No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)