FastQCFastQC Report
Sat 31 Dec 2022
SRR5842957.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5842957.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33580
Sequences flagged as poor quality0
Sequence length46
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGGGCAGGAAGGACCATGGGAATGGTTTTGAGGACCTGGATGA490.14592019058963668No Hit
TCATATGGGGGAGCCTGAGATTCTGCCTGACGGAGACCATGACCTC480.14294222751637878No Hit
CCTGCTGATTTTGCCAAATGGCGCTGTGTACTAAAAATCAGTGATC480.14294222751637878No Hit
CGCTGTGTACTAAAAATCAGTGATCGCACGCCGTCGGCACTGGCCA450.1340083382966051No Hit
CTTTTAGGGGAAGAGTGTGGGGAGTCTGGGCTCGGTAGTAACTCTG440.1310303752233472No Hit
TCTAAAGGGGCCATATGACGACGTGGTGACCGGGAAGTCCAGAGTC430.12805241215008933No Hit
ATCGCTGGGGCTGCCTGTGGAAGACTGGGAGAGGAGACACTAAGTG430.12805241215008933No Hit
CTTTTAGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC430.12805241215008933No Hit
GGTGCTGGGGTTTTTGCATGATTTGTACTCATACCAGGGTCACAGC420.12507444907683143No Hit
GCTTGCAGACATGGCTGACATCAAGAACAACCCCGAATATTCTTCG420.12507444907683143No Hit
CCTGCAGGGGACGAGCCCAAGAGCAGCGAGGAGGCGCTCATCGTCC410.12209648600357355No Hit
GGTACTGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACAT400.11911852293031568No Hit
CGCTATGGGATGCAGAAAGACTGGGTGCCCCGAGCTCTGCTCCTGT390.11614055985705778No Hit
GCATCCGGGCAGCCGAAACCTGCGAAAGGTCCCCGTCATCCCACCC390.11614055985705778No Hit
GTCATAGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAGG390.11614055985705778No Hit
CCTTACGGGAGACCTAACAATTTTCTCCCTTCATTTAGCTGGAGTG380.11316259678379988No Hit
GAAGAAGGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACA380.11316259678379988No Hit
GATCTCGGGGATCTCACGTAGGGGACCGGCCGTGAGGCATTGTGGG380.11316259678379988No Hit
GCTCTTGGGGGAAGAGGGTGGAGAACAAGCTCCAATCCCCCTCTTA380.11316259678379988No Hit
ACCTACGGGGAGAGAGGGCCATCGTGCGACCGCTGCCGCAGGCGCT380.11316259678379988No Hit
GCAACTGGGGGGAATTCGGGGAATTGGATTTGCAGAGCATATTAGC380.11316259678379988No Hit
TATGGAGGGGAATACACTCTTGCCTTAAGTAGGCTTAACCTATTAT380.11316259678379988No Hit
GAATTAGGGAGATACCCAGGCATCGGAGGCCTTTGGAGCTCCCAAC370.11018463371054198No Hit
CGCAACGGGACCTCGTTTTGGGAACTTTTCTTGGGGCTGTTTTGCT370.11018463371054198No Hit
GACAAAGGGGATTTCTCTTGGAGCAGTTAAAAGACTTCAGGAACAG370.11018463371054198No Hit
TGGCGAGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTTTTTC370.11018463371054198No Hit
CTTAAAGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT370.11018463371054198No Hit
CCTCCAGGGCGAATCATCGGGCGCATGTGTGTGGGGAACAGGCATG370.11018463371054198No Hit
ATTGTTGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT370.11018463371054198No Hit
TAGACCCGGGGACTCTGGCCAGGGAAGGCATGAGTGACAGAGCTGC370.11018463371054198No Hit
AGTGCTCGGGGAGGCCTTGCTCTCTAGCAGTCGCAGCGCCGGGTCC370.11018463371054198No Hit
TTTGCTGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC370.11018463371054198No Hit
AAATGCGGGGCATCGAGGATTACTCAGTCAGCCAGACCACCCTGGA360.1072066706372841No Hit
AAGCATGGGACTGTACAGCAGTGAACCGTATTGGACAGGAGTCCTT360.1072066706372841No Hit
AAGCGTGGGCTGGCCGTGCCCGAACTCCTGCTATGGCAGCTGGCCC360.1072066706372841No Hit
AAGCTCCCCACCCTGTTTCTGTAAAGAAAAATATACAGTCTACACA360.1072066706372841No Hit
CACTTCGGGGACATCAGGACTCACAGCCTACGGTGGCCAGACAGTT360.1072066706372841No Hit
CTCACTGGGGGGGCGACCTCTTCCTGCGTTCTCACGGCTCTTTCTG360.1072066706372841No Hit
CATAAAGGGGAAACAGAGGGGAGGAGGCCGGCGGCCAGCAGCATCG360.1072066706372841No Hit
TGCACAGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAGG360.1072066706372841No Hit
CGACTGGGGGTGTCGGGCCTGAGCCGAGCAGCTGCGCGACGTCATG360.1072066706372841No Hit
TGCTAAGGGGCTCGCAATCTTTTTCTCCCTCCAGTCAGTCTCCCTT360.1072066706372841No Hit
TCATCAGGGAGTACAGCGTATGGTTTGTGTGTGGGTGGTGCTATGG350.1042287075640262No Hit
AGACTAGGGAGTCTGTCTTCAGATGAAACCTATTCTCTGCTTGTAC350.1042287075640262No Hit
CCACCACACCCTGAGTGCAGGAACTGGGGAGGGTCCTGCTGGTGGG350.1042287075640262No Hit
AACTTAGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAGG350.1042287075640262No Hit
AATACTGGGAGATTGCCAGGTTACTAATCTGACACCCCCTTTGCTG350.1042287075640262No Hit
TTCCAGAACGCCTGCCTCCTTCAATGAAGGGAAAAATAAAATCCAA350.1042287075640262No Hit
GCCTTGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCT340.10125074449076832No Hit
CTGAGGGGCTGTCTGGCTGGAAACATGGCGTCGCGCAAGGAAGGCA340.10125074449076832No Hit
CTCTATTATAGGGATGCCACAACTAGATACATCAACATGATTTATC340.10125074449076832No Hit
ACCAGTGGAGTATTCAGTCTGGAGTTTCAGGATTTTGTGAATAAAT340.10125074449076832No Hit
CCTCCGCTTCGAGCTCCTGGGCTGTGAGTTGCACGGATGTTCTGAG340.10125074449076832No Hit
TTGTCAGGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAAC340.10125074449076832No Hit
ACTCATGGGAGAGTAGGAGACTTTAAAATGGAGACCTCGGGTCCTG340.10125074449076832No Hit
ACTGACGGGGAGGCTCAGGCGAGTAGCTAGCGCTCAGGCTCGGCAA340.10125074449076832No Hit
ATAATTGGGGGGAATTCGAGCTCTTTCGACGTTTTGAAGGAGGGTT340.10125074449076832No Hit
CTCCTAGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA340.10125074449076832No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)