FastQCFastQC Report
Sat 31 Dec 2022
SRR5842955.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5842955.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40280
Sequences flagged as poor quality0
Sequence length46
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCATCAACACTTGACAGCCTGGGATGAAGCATCAGAGGTGCCCCAC550.1365441906653426No Hit
CTCGTAGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC450.11171797418073487No Hit
GTTCTCGGGTCTCGAAGAGTTCTCCGGGACGTGCGCCGAGGGAGGG440.10923535253227407No Hit
CATGCTGGGAGCCCGGCAGGCGCGCCGCAGCTTCCCTCACGCCCAG430.1067527308838133No Hit
CAGAACGGGGCTGGATTGTGGTCTGTGGTAACACACTAGCTCTAAC410.10178748758689175No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)