FastQCFastQC Report
Sat 31 Dec 2022
SRR5842944.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5842944.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences87544
Sequences flagged as poor quality0
Sequence length46
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGCCACAACTAGATACATCAACATGATTTATCACAATTATCTCAT1000.1142282737823266No Hit
TAACCTGGGACGTATGTGACGCAGCTCTTAGCGCAATGTATGTGCT1000.1142282737823266No Hit
AACGCTGGGACCTGCGGCCTCCCTTGCCTAAGGCAGAGCCGTTTCC920.10509001187974046No Hit
CTTCTAGGGGTCACATGTTTTGGTGTGAGCCCAATGCTGCCAGTCT920.10509001187974046No Hit
TGCACCGGGCGCTGAGGACCACCTGAAACGGGCATCGTCGCTCTTC910.1039477291419172No Hit
CAAACGGGGATTGCAAAAATTGGTTGCTCATTCAAATTTTATGCCA890.10166316366627068No Hit
CGCGAAGGGGTTATTTTGACCGAGATGATGTGGCTCTGAAGAACTT880.10052088092844741No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)