FastQCFastQC Report
Sat 31 Dec 2022
SRR5842943.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5842943.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences83490
Sequences flagged as poor quality0
Sequence length46
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTCTAGGGGTCACATGTTTTGGTGTGAGCCCAATGCTGCCAGTCT1080.12935680919870643No Hit
GGATTTGGGAACTATGCTTTAGTTCAAGTTATGCATGGGGCAGGTT940.11258833393220744No Hit
TAGGACGGGACTGAACTATCTACATGATTTTCTCAAGTACCTGGCG910.10899508923224337No Hit
CGCAACGGGTGATGACAACTCTTCCAAAGCACCCAGGACTGTCACA880.10540184453227931No Hit
CATATGGGGAACTTTAAACACACCATGGGACATGTTTTCTCCACGG860.10300634806563659No Hit
ATGCCACAACTAGATACATCAACATGATTTATCACAATTATCTCAT850.10180859983231524No Hit
TTTACGGGGAGGGACACAGGTCGGGTTCATGCAGCAACTTTACTTC850.10180859983231524No Hit
TAACCTGGGACGTATGTGACGCAGCTCTTAGCGCAATGTATGTGCT850.10180859983231524No Hit
TAAAACGGGGGTTGGCGGAAGGAGACTGTGGGTTGGTGTCGGGGAG840.10061085159899388No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)