FastQCFastQC Report
Sat 31 Dec 2022
SRR5842940.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5842940.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences87948
Sequences flagged as poor quality0
Sequence length46
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GACATAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA990.1125665165779779No Hit
TCAGTGGGATGGGAGGCAACATGCTAAGGAAGACCACATCTGTCCC930.10574430345203983No Hit
AAGAAAGGGGGACCCAGATTGAAGCAAGATGGCGAGCGCGCGGAAC920.10460726793105016No Hit
GTAACTGGGGGCCGGCGACGCGGGCGTAAGAGGCGCGCGGCGGCGG910.10347023241006048No Hit
GCTGAAGCGGGGCCGGCCCGGTGCTCAACCAGCTGCTCGCACCTTC910.10347023241006048No Hit
GCTCTCGGGGCAGTTCGGCGGTCCCGCGGGTCTGTCTCTTGCTTCA900.1023331968890708No Hit
CCCAGTTGCCAAGGATGTGGATTTGGAGTTCCTGGCTAAGATGACT890.10119616136808116No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)