FastQCFastQC Report
Sat 31 Dec 2022
SRR5842939.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5842939.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences83833
Sequences flagged as poor quality0
Sequence length46
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AATCAGGGGATCAAGAACAGGCTGGAGTATGAAGCACGGAATCAGA950.11332053010151134No Hit
GACATAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA950.11332053010151134No Hit
GCTGAAGCGGGGCCGGCCCGGTGCTCAACCAGCTGCTCGCACCTTC940.11212768241623226No Hit
GCTCTCGGGGCAGTTCGGCGGTCCCGCGGGTCTGTCTCTTGCTTCA910.10854913936039506No Hit
CGTTACGGGGAGCATAATGAAGAACCTTAGGCGGGTGCATCCCATT890.10616344398983693No Hit
GTTACGGGGGGGAGGCGGCCGGAGCATCTCGCTCTGGCGGTGGCCG880.10497059630455788No Hit
ATCGCTGGGTAGGGAAATAGAGTCCCCAGATCACCTACACCCTCAA860.10258490093399975No Hit
CGAAATGGGACTACATGCTGAGCAAACTATCAAATTATACCCTATG860.10258490093399975No Hit
ATTTAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA850.10139205324872066No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)