FastQCFastQC Report
Sat 31 Dec 2022
SRR5842918.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5842918.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52666
Sequences flagged as poor quality0
Sequence length46
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTACTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA820.15569817339459993No Hit
CATACTGGGATCTGAGTCTCATCCCGAAGTCCATCATTCCTTTCTT670.1272168002126609No Hit
TGTTCAGGGTCAACACGCTGTTACACGAGTTCCTGCTGTGGGAGCC660.12531804200053165No Hit
TGGCAAGGGATCCTTGAACACATCTTCTTCCAAGTGGTGGAGTTCA610.1158242509398853No Hit
GAAGCCGGGGTGGTACTTTTGCCCAACTAGAAAAGTAGCAGCTGGA600.11392549272775604No Hit
GAGTTTGGGACATGATGTGGCGCACAGCCTGCCAATATGGCGGTGT590.11202673451562678No Hit
TGTAGGTGGGATGACTATGCTGGCCAGGAGGCTGATGAGCTGAGCT570.10822921809136823No Hit
TCGCGAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA570.10822921809136823No Hit
GGCCTAAGTGGCCCCGGTCGGAGGAGCCTGGAGCAGAAATGGCAGC570.10822921809136823No Hit
GTCCAAGGGATCGTCTTCAATTTCCATTAAAGATTCAGGCTCACTG570.10822921809136823No Hit
AACAGTGGGGAATCCGCACCCAGCAGGCATGCCACCATACACCATT560.10633045987923898No Hit
GTTATAGGGAATGGCGGACATGCTTTATAAAGGAGAGGGGAAAGCC560.10633045987923898No Hit
TACTATGGGGGAGCCTGGCCTCTGTCCCGCTGTGTGTGCCTCTGTT550.10443170166710972No Hit
CATAAGGGAACGAGGACTAATGAGACACCAAAGTTCTAACCACTTC550.10443170166710972No Hit
GCTTCAGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC550.10443170166710972No Hit
ATCTTTGGGATCTAGCACCTCTGTGAACATTTCACCCCATCATAAA550.10443170166710972No Hit
CAAACTGGGATTATTTTAAATGAGGTTCTCACTTTTTAATGCAATA550.10443170166710972No Hit
TTTCTTGGGATTCCCAGTATCCTGAAAATATCCCAAGTCAAAATAC550.10443170166710972No Hit
GTAACTGGGGCCCTTTCCGCTCGGCCGTTCTCCTGTATAGGAGGCA550.10443170166710972No Hit
TATGCGGGGACTTCTGATTCTGACAGACTCAGGAAGAAACCATGGT550.10443170166710972No Hit
GCTAATGGGAGGTTCCTGGAGAGCCACTGGTTTGTGTGGGTCACAC540.10253294345498046No Hit
AGTTTGGGGATTCAAAAATGAGAAGAGAATCAAGCTTCAGATTTGG540.10253294345498046No Hit
ATGCTTGGGGTGGCCTGCTGCGCAAGGGGACGGTGCTCCTAGCTGA540.10253294345498046No Hit
CGCTGCGGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCT540.10253294345498046No Hit
GCGTGGGGGGTACAATATTTTTATACACCCTGGAGTTAAATGGCTT540.10253294345498046No Hit
TAGTATGGGAGTCACCTTGAGCAGGGAGTGTGCTGTGGGCCGAGCA540.10253294345498046No Hit
AAGGGGGAAGTCAACAGCAGTCCCTAGGTAGATCTTAGGATCCCTT530.10063418524285117No Hit
TACTTTGGGATGAGCGGCTACCTCTACAGATCCAAGGGCAGTAAAA530.10063418524285117No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)