FastQCFastQC Report
Sat 31 Dec 2022
SRR5842917.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5842917.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49672
Sequences flagged as poor quality0
Sequence length46
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTACTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA760.15300370430020938No Hit
GTCCAAGGGATCGTCTTCAATTTCCATTAAAGATTCAGGCTCACTG610.12280560476727331No Hit
AACCAGGAACACAGAAGTCCTCTGTCCTTCCTGCCAGAAGCCTTTG590.11877919149621517No Hit
GAGTTTGGGACATGATGTGGCGCACAGCCTGCCAATATGGCGGTGT580.1167659848606861No Hit
ATCGAAGGGATTGACAGGAACCAGCGCACTGGGGCCGAATTGTATC580.1167659848606861No Hit
AGCCATGGGCGATCTACAATGGGGGTTGTCCAGATTCCGTTCAGGA570.11475277822515703No Hit
TTAGACGGGCAAGATAGATGTCAGTGTTAGCAGAAGTAGCTTCACT540.10871315831856981No Hit
TCTCTGGGACTTCTGATTCTGACAGACTCAGGAAGAAACCATGGTG530.10669995168304076No Hit
CACTGAGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC510.1026735384119826No Hit
AGTTAAGGGAGCCCGGGTCGATTATAACAACGGTGCAATCTCAGCT510.1026735384119826No Hit
TGAAACGGGGAACTTACCAAACTTACACTGTATCCTGGATTTTTTC510.1026735384119826No Hit
AAGGGGGAAGTCAACAGCAGTCCCTAGGTAGATCTTAGGATCCCTT510.1026735384119826No Hit
TCACATCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA510.1026735384119826No Hit
ATTGCAGGGGGGCAGAAAGAAGTTCACATACATGGTCTACATTCAC510.1026735384119826No Hit
TGGCAAGGGATCCTTGAACACATCTTCTTCCAAGTGGTGGAGTTCA500.10066033177645355No Hit
CAAACTGGGATTATTTTAAATGAGGTTCTCACTTTTTAATGCAATA500.10066033177645355No Hit
TGCACTGGGAGCTCCAAACATTTTTAAAATGAAAAGGCACTCTCGC500.10066033177645355No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)