FastQCFastQC Report
Sat 31 Dec 2022
SRR5842916.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5842916.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46262
Sequences flagged as poor quality0
Sequence length46
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGCGCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA730.15779689594051272No Hit
TACTCAGGGGGGAATTCCTGGAGATTGTCTCGTACGGTTAAGAGCC620.13401928148372313No Hit
CGTAGGGGGATGGCAGCAGAGAACGATGCCAACATCGCCATAGTGG620.13401928148372313No Hit
CAGTGCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA610.13185768016946953No Hit
GTCTGCGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC600.12969607885521595No Hit
TGTTTTGGGCTACCTGGGGCCGGAACCGCATCCTGGAGATTGTATA590.12753447754096237No Hit
AGTAGTGGGAATCCTTAAAGCTCTGAAAGAAAAATCAACTCCCTCG590.12753447754096237No Hit
CGCACTGGGGAAATCCCCTGAACCACTGGGTGAAAATGAGTCCTTC580.12537287622670876No Hit
AGTAGCGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC570.12321127491245515No Hit
AGCAAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA570.12321127491245515No Hit
TCGCACCGGGATGTTCAATCAATGCAAAGGATTATTTGATACATAG570.12321127491245515No Hit
CTTTTTGGGACCACATCGCTACGCCCAGGAAGTGAGCCGCCTCTGC560.12104967359820155No Hit
CATGTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC560.12104967359820155No Hit
GCGCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC560.12104967359820155No Hit
CAGCAGGGGGCAAGGGTAGGAGAGAGAGTGTGTGTGTGTTGTGTGT560.12104967359820155No Hit
ACCAATGGGATCACTCGAGGGTCATTTACTCAGTGATGTAGGGACC550.11888807228394795No Hit
CTTATAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA550.11888807228394795No Hit
TCTGGTGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAG550.11888807228394795No Hit
GATAATGGGAAGGGAGCAGAACTTGCGTGCCCTGGAGCTGGAGCCC550.11888807228394795No Hit
CTGCTAGCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCT540.11672647096969435No Hit
ACAGGAGGGGGGCAGGATGAGATGATTGATGTCATTGGCGTGACAA540.11672647096969435No Hit
TCTAGTGGGAGAACAGCCAAGGCTATGTGGACAGACTCTCAAAAAA540.11672647096969435No Hit
CTACTAGGGGCATCTTTCCCTAAACATCTTTTGATGGAAACACTGT540.11672647096969435No Hit
CATACTGGGGGATCCGAAGAAACTGGCTGCTGGGGTTTGGCCCCGG530.11456486965544074No Hit
AACTCAGGGATGACCCCAATTTCTGGCTAGATGACAAGTGACATAT530.11456486965544074No Hit
TCTAATGGGGGCGCTGCAGGTGGCCCTGGGGTTGGAAGAGCAGCTG530.11456486965544074No Hit
AACTATTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA530.11456486965544074No Hit
CTTTTTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA530.11456486965544074No Hit
AATCACGGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATAC530.11456486965544074No Hit
TTCGCAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA520.11240326834118715No Hit
TATGAGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACTTC520.11240326834118715No Hit
GCATTGGGATAGCTGAGTTTCACTGTCAATTCAAATGTGAACTAGC520.11240326834118715No Hit
TGGTTGGGAAGTGCTGAGAGCCAGCTCTGCTGTCTGCACTGTGTAT520.11240326834118715No Hit
ATTCATGGGGCTTTGAACTCAGTTTCTAATCTAGGCATATCCAACC520.11240326834118715No Hit
GCTATAGGGGGCAGATTTCTGCTTCAATAACAACTGCCTTAAATAT520.11240326834118715No Hit
GTTAAAGGGGGGCTGAGTGGCCTGGCTGCTGGCTTTGCCATTGGCA520.11240326834118715No Hit
TAAGCAGGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCT520.11240326834118715No Hit
CTCACGGGGTGGGACTGCAGGAGTTCTCTGGTGGCCTCGTGCTGTC520.11240326834118715No Hit
CTACGCGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC510.11024166702693354No Hit
GCATCGGGGATCTGCTTGCGGGAGGAATATCCAATCAAAGATACTC510.11024166702693354No Hit
ACAGTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA510.11024166702693354No Hit
GCGCATGGGTTTCTCTTCAACGAGGCGGCCGAGCGGCAGACGCCAA510.11024166702693354No Hit
AGGCGGGAGCTGGCTAGAGATAAAGCAGAAACATTACTGAAATCAT510.11024166702693354No Hit
CACTTCGGGTCCCAGGGATTGGACCACCAACCAAGGAGTACACATG510.11024166702693354No Hit
CCCATGGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT510.11024166702693354No Hit
TGCTCGGGAGTTCGTCCAGATCTCGCTGGAACTAAGATGACAATCC510.11024166702693354No Hit
GTTGGGGCTCCTGACTGACGCTGGCTTTTTGGTCCGTTCTAGGTCC510.11024166702693354No Hit
TCCACATGGGCACTGTGAATGCCGACTCCTCTGTGCAGTTACTAGC510.11024166702693354No Hit
TGAAGAGGGAGGCATGGTGGCTTTCCTACTTTCTCCTCGAGCTCTC500.10808006571267996No Hit
CTTGTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA500.10808006571267996No Hit
CTTTCTGGGATGGACTTGGGGGAGACTACAGAAGTAGACAAATTTT500.10808006571267996No Hit
AACCATGGGATTGTTAAGGAAGAGGGGTAGTGTTAGAGCAACAGTT500.10808006571267996No Hit
TCGCAAGGGGAATGGCCAGAGAGACAAGGGAATAAACCATGGCCTA500.10808006571267996No Hit
CAGAACGGGTCGACTTCTAGTGTGGAGACGAATTGCCAGAATTATT500.10808006571267996No Hit
TAACAGGGGATTCTTTGACACGGTCTCACTTTGACCCCTCTCTCAT500.10808006571267996No Hit
TTTGCTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC490.10591846439842637No Hit
TTATTAGGGATGCCCTCTGAGGCTGTGCACCGTTCCCTCTCAGGGG490.10591846439842637No Hit
TCTATAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA490.10591846439842637No Hit
GCGCTGGGGACTGGCATATACAGTTCTCAGGACCCAGGCTCCCAAG490.10591846439842637No Hit
TGCCGGGAGTGTGGCTCTAATACCTGACAGCACTTTGGGGAGCCCT490.10591846439842637No Hit
TTCAAAGGGTATGGCCTACCCATTCCAACTTGGTCTACAAGACGCC490.10591846439842637No Hit
TCGACTGGGGTCATCATCACGTCAGGAGGTGTGTCCATGGGGGAAA490.10591846439842637No Hit
TTCCTAGGGGATCTTTAATTGCTACCCTAACCTTGACCTTTAACCT490.10591846439842637No Hit
GATGGGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA480.10375686308417276No Hit
CGCAGTGGGCTTTTCCTCAGCTGCCGCCAAGGTGCTCGGTCCTTCC480.10375686308417276No Hit
TGCACTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA480.10375686308417276No Hit
TCAATAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA480.10375686308417276No Hit
AAGCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACT480.10375686308417276No Hit
TAGCAGGGCTGATTGATCTGTGCCCTCAAGATGTGTGATCTCTCGG480.10375686308417276No Hit
GGCACGGGGGGAGCAAGGTCGCCAGCGCACTGCCAACCTAGGCGCT480.10375686308417276No Hit
TTAAGCGGGGGTATACAGGCTGGGTGTCTCTTCCTGTATTAAAAGT480.10375686308417276No Hit
GACAAAGGGATTCAAATATATGAACCTAAGGGGCCATTTTCATTTA480.10375686308417276No Hit
CATCTTGGGGGAGGAGTGCGAAGCGCTCTGCACGCGCCTGGCCATC480.10375686308417276No Hit
CCAAGTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA480.10375686308417276No Hit
TTACGCGGGGCCCGCCGTGAAGGTCCCCCAGCAGGCAGAGCTGGTG480.10375686308417276No Hit
GAAGCTGGGAAGAAATAAAGCTATTCAACTTGAAAGTGAGCTGGAG480.10375686308417276No Hit
GCCATCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA480.10375686308417276No Hit
CGTAATGGGGTAAGAGGTGAGGTTTACATAGAAAGAACTCAGTCGG480.10375686308417276No Hit
CACCAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA480.10375686308417276No Hit
TTGCCGGGGACGGATATGAGAGTCCAACTGTTCAGGTTCAATCAGT480.10375686308417276No Hit
TAGCAGGGGAAGCACACTGTAGAGAATGCAGACACGTATGCACATA480.10375686308417276No Hit
CTCATAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA470.10159526176991916No Hit
TGGCACGGGGAAAGTAAATAACAGGACACGAAGTTTAAACTGTTTG470.10159526176991916No Hit
CCGCACGGGATCTCTCACTTTCTGCCACTCTCTGGGGCTCAGGGGT470.10159526176991916No Hit
TTGTATGGGGGAATAAAACAAGCAAGAGTAGAAGTCGGAGCAGCAG470.10159526176991916No Hit
CATGGTGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA470.10159526176991916No Hit
CAATCCGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT470.10159526176991916No Hit
GATTGGGGGTATTTACTACTGCAAGCGTTCTTCTCTTTTGACTGTT470.10159526176991916No Hit
TTGCTAGGGACCACGACTTCAACGTCCTGAGTACCTTCTCCTCACT470.10159526176991916No Hit
CTGTTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA470.10159526176991916No Hit
CAGCACGGGATCCCTAGGTACGTAGGGGAGGAGAACTCAGTTCCCA470.10159526176991916No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)