FastQCFastQC Report
Sat 31 Dec 2022
SRR5842915.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5842915.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43690
Sequences flagged as poor quality0
Sequence length46
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGCGCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA720.16479743648432135No Hit
ACAGGAGGGGGGCAGGATGAGATGATTGATGTCATTGGCGTGACAA700.16021972991531241No Hit
GCTCCTGGGGAATACATATTTGGTGATACAGTTTTAGTCGAGTGCA630.1441977569237812No Hit
TCGACTGGGGTCATCATCACGTCAGGAGGTGTGTCCATGGGGGAAA630.1441977569237812No Hit
CGAAATGGGCTGGCTTCGGGGGGAATTCTGGACATTAATTAGGGCT570.1304646372167544No Hit
GTTAAAGGGGGGCTGAGTGGCCTGGCTGCTGGCTTTGCCATTGGCA570.1304646372167544No Hit
TTCAGCTGGGGAGTTCTAGAAATCTGCCGTTACACTACAGTGCTTG560.12817578393224993No Hit
TATGACGGGATCATCTCAAGTGTTTCACATGTTCTACCTGCCGGAA560.12817578393224993No Hit
AGCACAGGGATGTCCCTCCTCCTTCCCTTGCTCCTCCTCTGGAGAA560.12817578393224993No Hit
TCAATAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA550.12588693064774548No Hit
AGGTGCGGGGTGGCCAAGGCCCTGCAACTATGGGCAGGGATGGATC550.12588693064774548No Hit
CAGCAGGGGGCAAGGGTAGGAGAGAGAGTGTGTGTGTGTTGTGTGT550.12588693064774548No Hit
AATGGAGGGAGGACCTAGGCTTGAAAACACAGTAGTGGTCCAGGGA540.12359807736324101No Hit
CTTGTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA540.12359807736324101No Hit
CACCAAGGGCACACACATATACACATGTATTTACACATTCACACTC540.12359807736324101No Hit
CTTATAGGGGAGGGTGGCTGGTCCTCTCTCTAGGACTCTGCAGACC540.12359807736324101No Hit
GCACCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA540.12359807736324101No Hit
TCATTAGGGATTTGGTCGCCCTCGGCTGCGCTACGCGGTGGATACT540.12359807736324101No Hit
AAGCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACT530.12130922407873655No Hit
TCTAGTGGGAGAACAGCCAAGGCTATGTGGACAGACTCTCAAAAAA530.12130922407873655No Hit
GTCACCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA520.1190203707942321No Hit
TTTGCTGGGACATTCTGAAAGCCAAACTGTGTACCACAGAGACCCT520.1190203707942321No Hit
TGCACTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA510.11673151750972763No Hit
CCAAGTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA510.11673151750972763No Hit
ATGAACGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC510.11673151750972763No Hit
TTGCCGGGGACGGATATGAGAGTCCAACTGTTCAGGTTCAATCAGT510.11673151750972763No Hit
TCGCACGGGGCCGCCATGGTGGCGTCTGTGCCGCTGCGGAATGTCA500.11444266422522317No Hit
TAACTAGGGCCTTTTGTGACTGGCGGTGAACGAGTGCGCAGTGCCA500.11444266422522317No Hit
CCAATTGGGGATCTACATGCGGGCTTCTAAGGGACCCGTGACAACC500.11444266422522317No Hit
TCTTGGGGGGGAGCCAAAGGGGACTTGAAGGAGACGGGCGACACGG500.11444266422522317No Hit
TGTTTTGGGCTACCTGGGGCCGGAACCGCATCCTGGAGATTGTATA500.11444266422522317No Hit
TCAACCGGGACCGTGATTCCTGAAGAAATCGACCCCTAGGCAGAGG500.11444266422522317No Hit
CAAAGTGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC490.11215381094071869No Hit
GCACCTGGGCAAGTTATAGCCAAGGCTGATGTTGTAAGATTGGGCC490.11215381094071869No Hit
GAACATGGGACTCAAGAACTTCAGAGGCTAGGACATCTCACACTGA490.11215381094071869No Hit
GCAACTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA490.11215381094071869No Hit
CATCTTGGGGGAGGAGTGCGAAGCGCTCTGCACGCGCCTGGCCATC490.11215381094071869No Hit
TGCTCGGGAGTTCGTCCAGATCTCGCTGGAACTAAGATGACAATCC490.11215381094071869No Hit
CGCCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACT490.11215381094071869No Hit
GTTGGGGCTCCTGACTGACGCTGGCTTTTTGGTCCGTTCTAGGTCC490.11215381094071869No Hit
TCCACCGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC490.11215381094071869No Hit
CAGCACGGGATCCCTAGGTACGTAGGGGAGGAGAACTCAGTTCCCA490.11215381094071869No Hit
TAGCAGGGGAAGCACACTGTAGAGAATGCAGACACGTATGCACATA490.11215381094071869No Hit
CTCACGGGGTGGGACTGCAGGAGTTCTCTGGTGGCCTCGTGCTGTC490.11215381094071869No Hit
CTACGCGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC480.10986495765621423No Hit
TTGTGGGGGATTTCTTCCTTGTTCATTTTCCCCCTACTAACAACAA480.10986495765621423No Hit
AAGTTCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA480.10986495765621423No Hit
ACGACAGGGATCCAAGTCCATGACCATTAACTGGAGCCTTTTCAGC480.10986495765621423No Hit
AGCGCAGGGACCAGTGATCCGAGGCAGGCATCACTGTATTTCCTGC480.10986495765621423No Hit
TAATCGGGGGAAGAGAACCGAGAGCACCGTGTCCGGAGGATTCACG480.10986495765621423No Hit
CTTATAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA470.10757610437170978No Hit
TACCATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA470.10757610437170978No Hit
TGGTTGGGAAGTGCTGAGAGCCAGCTCTGCTGTCTGCACTGTGTAT470.10757610437170978No Hit
TCTAATGGGGGCGCTGCAGGTGGCCCTGGGGTTGGAAGAGCAGCTG470.10757610437170978No Hit
GAAGCTGGGAAGAAATAAAGCTATTCAACTTGAAAGTGAGCTGGAG470.10757610437170978No Hit
CAAGCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA470.10757610437170978No Hit
CTTATTGGGAGGCTTACGGTAGGTCCGAATGGCACAAAGCTGGTTC470.10757610437170978No Hit
TTACAAGGGATGTCTTAATTAGTTTAGTAGCTTGTGGAGCGATCAG470.10757610437170978No Hit
TAGCTTGGGGACTTCTGATTCTGACAGACTCAGGAAGAAACCATGG470.10757610437170978No Hit
TGACCAGGGGAGGACCACCTGAAACGGGCATCGTCGCTCTTCGTTG460.10528725108720531No Hit
CTATTAGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC460.10528725108720531No Hit
GCATCGGGGATCTGCTTGCGGGAGGAATATCCAATCAAAGATACTC460.10528725108720531No Hit
GCTTCAGGGCAGCTGGCCCAGCTGCCATCCTCGGGGCTCCCCAGGC460.10528725108720531No Hit
GACTTAGGGACCACGACTTCAACGTCCTGAGTACCTTCTCCTCACT460.10528725108720531No Hit
TCTGCTGGGGAACGAAGGGACGGACGCAGCCCGGGCTGCCATCGCC460.10528725108720531No Hit
TGCCGGGAGTGTGGCTCTAATACCTGACAGCACTTTGGGGAGCCCT460.10528725108720531No Hit
AGGACTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA460.10528725108720531No Hit
TTACGCGGGGCCCGCCGTGAAGGTCCCCCAGCAGGCAGAGCTGGTG460.10528725108720531No Hit
GATAATGGGAAGGGAGCAGAACTTGCGTGCCCTGGAGCTGGAGCCC460.10528725108720531No Hit
CTTTTTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA460.10528725108720531No Hit
CAATGGGGGCGGCGTGGGGGGAATTCTGGACATTAATTAGGGCTGA460.10528725108720531No Hit
AATCACGGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATAC460.10528725108720531No Hit
CTACTAGGGGCATCTTTCCCTAAACATCTTTTGATGGAAACACTGT460.10528725108720531No Hit
AGCTAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA460.10528725108720531No Hit
CTTGCTGGGACAGACGACTGTGATGACTTTGACATCTCCCAACTGA460.10528725108720531No Hit
TCGCACCGGGATGTTCAATCAATGCAAAGGATTATTTGATACATAG460.10528725108720531No Hit
CACCAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA460.10528725108720531No Hit
GAAGTTGGGGTCCCATCCTGGAAGTGCCAGCTAGAGCCGTAAAGAA460.10528725108720531No Hit
CCTTGTGGGACATATGATTACTTCTGCCAGCCTGACCCATAGCCAT450.10299839780270086No Hit
AGGCCTCATGTTGCCTTATGCAGCCACAGAGGTGCACCATGTGGTG450.10299839780270086No Hit
AGCGGAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA450.10299839780270086No Hit
TACATGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA450.10299839780270086No Hit
AGGCGGGAGCTGGCTAGAGATAAAGCAGAAACATTACTGAAATCAT450.10299839780270086No Hit
TCACTACGGGACATGGAGCTTGGTTACCTAGTGTTCTGGCCTAGGA450.10299839780270086No Hit
TGCTCCGGGACATCTCTACTGTGGGAATCACAGGGAAGCTGCTGCA450.10299839780270086No Hit
GAGCGAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC450.10299839780270086No Hit
AACCACGGGGGCCATTGGCCTCTCTGTGGCAGACTTGGCTGAGAGC450.10299839780270086No Hit
GGGCCCGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAGG450.10299839780270086No Hit
CGATTAGGGGCTTAGAGTGGACTATCAAGTGAGCCTAAAGGAACTT450.10299839780270086No Hit
TAACAGGGGATTCTTTGACACGGTCTCACTTTGACCCCTCTCTCAT450.10299839780270086No Hit
AGCATAGGGGTGTGGAGTGAGGGGATATGGTGACTGTGCCCTTCAA450.10299839780270086No Hit
GAGCCTGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT450.10299839780270086No Hit
TAATAAGGGGATCCACCGTACCAGGAAGCAGAAATATTTCTACAAA440.1007095445181964No Hit
AACCATGGGATTGTTAAGGAAGAGGGGTAGTGTTAGAGCAACAGTT440.1007095445181964No Hit
ACAGTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA440.1007095445181964No Hit
TCACAGGGGGGGTCCCATTTATTTCTGAGTGAGATGGTGAGCAATC440.1007095445181964No Hit
GGGCTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA440.1007095445181964No Hit
ATATTAGGGACATCTTCTGAGGTAATTACTTTCATAAGGAAGCTGT440.1007095445181964No Hit
CGTAGGGGGATGGCAGCAGAGAACGATGCCAACATCGCCATAGTGG440.1007095445181964No Hit
TACATTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA440.1007095445181964No Hit
CGTCAGGGGGGAAGGAGACAGCAAGGGACACGGCTTCCCTAGGTGT440.1007095445181964No Hit
CGTAATGGGGTAAGAGGTGAGGTTTACATAGAAAGAACTCAGTCGG440.1007095445181964No Hit
TCAAACGGGACAGCCGCCCGGGAAAAGATGGCCGCGCCTGCAGCGT440.1007095445181964No Hit
GCCCGGGGAATTAGCCTTGTCTCTGTCTCCTGGGATGGCTGCCCTT440.1007095445181964No Hit
CAGTCAGGGATCCATCACGCTCCTAGAACTCTTCAAACCGATCTCT440.1007095445181964No Hit
GACATAGGGTGCTTAATCTATAGTTTCACTGTTAGTAAATTAATTT440.1007095445181964No Hit
TTGCCAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA440.1007095445181964No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)