FastQCFastQC Report
Sat 31 Dec 2022
SRR5842905.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5842905.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41364
Sequences flagged as poor quality0
Sequence length46
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTTACGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA470.11362537472198048No Hit
GCTGCTGGGGTAGTCCTAGCTGGCCTCAAACTCACAATACTCTTCC450.10879025239338555No Hit
CGCGCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC450.10879025239338555No Hit
TGCTGTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA440.1063726912290881No Hit
ACACATCCCCTATTATAGAAGAGCTAATAAATTTCCATGATCACAC420.10153756890049319No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)