FastQCFastQC Report
Sat 31 Dec 2022
SRR5842892.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5842892.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30917
Sequences flagged as poor quality0
Sequence length46
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGCGGGGGCTTTTGCGCATGTGCAGAGTGAACCGCGGAGAAGGT420.13584759193970955No Hit
TTATATGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT410.13261312546495455No Hit
TCACTCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA380.12290972604068959No Hit
GAGCAAGGGGGCTCCTTCTGCCCAGTTTTCCTTGCTTTGTCCACAT370.1196752595659346No Hit
AGATCAGGGGATCTCGGGATGGGGGGCATCTTCAACTCCGAGCTGG370.1196752595659346No Hit
AACCACGGGAGAGCACCTGTTGGAGTCTGACCTCTTCTCAACAGCC360.1164407930911796No Hit
CCTACAGGGGGACAAAGATATCCCTGATTCTATGCAATAACAGCCA350.11320632661642463No Hit
ATTTTTGGGGGGAATTCCTCCTCATGTGAGCGGATCACTATCTACA350.11320632661642463No Hit
TACAAAGGGGTTCTCATCAAGACATGGATGGGTAAAAAAAATTCAA350.11320632661642463No Hit
CTTCATGGGGCACAGATAGCTCACTTATAGACTGTTTGCCTAGCTT340.10997186014166964No Hit
GTGCAAGGGGTGGTGCTCTTCATCTTCGCCATCCTCTGCATCTTCA340.10997186014166964No Hit
TTCTATGGGGGGGCGGCGCGAACGGCCCAGCCATGTCCGCAGCCAT330.10673739366691465No Hit
AAATATCGGGGGAGTGATGATGTGGTCTCAGTAGGAACGGTAACAT330.10673739366691465No Hit
AGCAAGGGGGCGTGCGTCCTCACTCTGAGTACCCCTCTGTCTACGC330.10673739366691465No Hit
GGCTCAGGGGTGTCGGCACGAAGTGTCTTCCGATGCAGTGTCCAGT330.10673739366691465No Hit
TGTTGTGGGAGGACCTGGTGGTGCTGCTGTTTGAAACTGCTCTGCT330.10673739366691465No Hit
TACTTAGGGGACGGTGTACACACAGGGTGGGGAGGCCTCAGAGTTC330.10673739366691465No Hit
CTAACCGGGGGTGCTTGCCAGGAATGGCGGCGGTCACGGTAAACAG330.10673739366691465No Hit
GGAACGGGATTCTCTCTCACTTCTAACATACATACCAGTTTTATGC330.10673739366691465No Hit
CGTCAAGGGGAGGGCAGGGTGTATATCTCTCAGACCAGCAATCGTG330.10673739366691465No Hit
AACTGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACATGG320.10350292719215966No Hit
CGTCTTGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC320.10350292719215966No Hit
ACTCAAGGGGGCTGGCGGCCCGGTGGCCTACGCGTGCGTCCTCACT310.10026846071740467No Hit
CAACCTGGGGGGAATTCGAGCTCTTGATGATGATACTTAACCAAAC310.10026846071740467No Hit
CCTACAGGGAGTATCGTCCATCTTTCAACAAAGAGTCTTGCTTCTG310.10026846071740467No Hit
TAACCAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA310.10026846071740467No Hit
CAACTAGGGAGCAGCCTGCGGGCTGCCGTGGCGTTCAAGGCGGAGG310.10026846071740467No Hit
AGACAAGGGTCTCGGAAACCAGACACGAACTGGAAGACAGCTCAGC310.10026846071740467No Hit
CGAACTGGGGCTCTTCCGATCTAGCAAAGGGAGGGGCAGCGGGTGA310.10026846071740467No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)